Array 1 8048-8231 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 8048 35 100.0 39 ................................... CGTTGAATTCACATTCACGGATGACGGAAGTAGCAGTGT 8122 35 100.0 40 ................................... CATGGATGACAAGCCATGAGAATTCTTGCTCTGACTGATA 8197 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 3 35 100.0 40 GTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAAC # Left flank : GCTTCGCGGCGGATACGGGGCAGAATGTAGGGGTCTAAGGCGCGTCGGGTACGGGTGGCGTTGCGTTGTACCGTTGAGATGAGTGGGTCGGAAAAACTGACTGATGGTTCTTCGGACTCAGGTTCTTCTGCTGCTGGGTTGCTGGGTGATGGGGAAACGATTTCTTCCCAGTCTAGGTTCAGTTCTTGGCAAATTTCGATGAAGATTGAACGGTCAACGGGTCTGCCATTGAAGAATTTGTTGACGGTTGACCAGGAGGCGATTCCTCTTTCGTTGGCTAGTGCTTTTTGGGTTAGGTTGTTGCGGTTTAAGGCATTTTTCGCTTTTTCGATGCCTTGAGGGGATGCCTGAAGAGATCGTCCTGCCATAGCACCCTGGATTTGAAAGGTTTAAGAGTTTGGCTTGACTTGATGGGTCAATTTTATCAGGCAATTGATTGGAACGTTGGTAATGTTGGAATTCGTTAATATTTCCCTGTCGTCTTTCAATCCACCTGTATG # Right flank : CCCTACCCTTTTGGAACCCTTACTGGTAGAGAATTTGAGATGCCCTTATATGGGGGGGGTCTAAAATCACCCCAGATAACTGAGACAATTTCTCAATTACCCGCTTAAGCAAAAAGCTCAAACCCTTATCCAGAGCGCTATATGGGGGGGTCTACGAAAAAATCAGGATTTCAGCCCTTGCCTGACCCCCCCATAAGAAAGCTGCTGACGGAACTTAAGTTAAGTTAAAATGAATGGCACTGACATAAGAGCCTTGAAATAAATTTCAGGCTCAAAGCTGAAGTAAGCTAAAGCTTACTGGATAAGCTTTTCAACCCGTTTCAACGGGTTTTAGCTGTTAGCGCGAACTTTAGTTCAGGGCTTAAGTCAGTGCCATTCAAGTTAAAATACTCAACTCAAAAATCTATCACCTAAAATAATTCAGTTTTCCAGGTACAGTTATTCTTGAACACTATCCTGACGCTAACACCAACCCCATGTCAAGATAGTGAGCCTCCTAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 2 11790-11240 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 11789 35 100.0 34 ................................... GTTAGCGGAGAAAACCCCGTCCGAACCCAAACCG 11720 35 100.0 41 ................................... TTTATCGAGGGAGAAAGTTTCCAAAGTTATGGTTTTACAAT 11644 35 100.0 44 ................................... CCCCAGTCAGCCCAACCCCGGTACATCCCCCGAAATACCACCAC 11565 35 100.0 37 ................................... TCAATGATTGTGAGAAAGAAAGGAAAAGAACCCTAGG 11493 35 100.0 38 ................................... TAATCGGATCAGGCACATATACCTATGCCCAGCCAAAT 11420 35 100.0 40 ................................... CGGATGACGGAAGTAGCAGTGTTCTTATTATGAACGTTGC 11345 35 100.0 36 ................................... TAATCCAGAGCGGTAAAACACCGCTTGAAGCATACA 11274 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 8 35 100.0 39 GTTTCCGTCCCCGTAAAGGGGAAGAGATTTGAAAC # Left flank : CTTGTAAATTCAAGGTCTTTTGCACGTTTGAGTTGGTGGGCTAAGTATTTCACTCGACGCCGTTCTTCCGTCTCGATGCGTCCGAAATAATTGCCTTTATCATCAAGGAACAGTACAGGAATGCATCGGGATAAAGCGAAATATATGGCTTTATCAGACCGCTTACAGTAGCCAATGAGAACAAGATTGTTGACCTGATTGATTGCTACTTTGCAGCAGGGTTTATGGGGGTGAAAAACCAGTAAATGTTGGTCTTGGACTTTTAGATACGACTCAGTGCCAGTGATGTAAAGGTTGTTCATTTTCCCAACCGTAGTTTTTAGGAATTGGGAGCTTTAAGTTCTCCACAGTTCCATCTTTACGGAAGGGTATTTGAGTATGAGTATGAGTAACTGGCTGTTGTATATGAGTTTGTATATGACTTCAAAAATGTCTGATTTGGCTTTTGAGTGGCGAGAGTGGTAGCGTGGGCAATGCCGACCCTACTCTATCACAGAAGG # Right flank : CCTACCATTCTGGACTCCTTACTGGGAGAGAGTTCAAGATACCTGTATATGGGGGGGTCTAAAATCACCCCATATAGTTGAGACTAATTCTCACTAATCCCCCAGATCGAAAGCCTGAAATCCTTACCCAGAGAGCAATATGGGGGGGTCTACGAAATCATGAGAGTTTTAGCGATCGCCCGACTCCCCCATATAGGTGTTCTTTAGCTCTCTCCATAAATATCAATGAGCATTTGCCGACCATTCAATTGTCAAGGTACAGACGTTCACATACTCGCTTTGCCACAAAATAACCGAAATTAGCCCAAAAGTCAACTCATATACAAACTCATATACCCCTACCCCGTACTCAAACTCGAACTCGCATACCTCCTTGCCAAGATGAAATTGTCCAGATTTCCCTTTCTTACTTTTGCCTTTTCACTTTTTACTTTTAACTTATCCCAATGGACTTTCCCTTAGAAGATTTAATCGCCGCTTGGCGGCAAGTACGTCGAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTAAAGGGGAAGAGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 16258-15495 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 16257 35 91.4 39 CG............G.................... AAGTGCAATCAGTGTTTTCGCAACATCGGTAGGACTCGC 16183 35 100.0 38 ................................... CAATCGGGGTGCTTGGCGAAACACTCAATCAGAACAAT 16110 35 100.0 40 ................................... TATTATTTCTACACGAAGAATGCCTTGAAAAGCGTAAAAT 16035 35 100.0 37 ................................... GCTCGCGTTTGGCCACGGTTGACGGAACTGTGTATGA 15963 35 100.0 38 ................................... TTAGTGGAAAATGAACTAGTTAGTGGTTACCAAATTGG 15890 35 100.0 37 ................................... AAAATTTCATCGCCATCGTTGTTGCCATTGCCGCTAT 15818 35 100.0 35 ................................... ACGGAACTGTGTATGAAAGCTCTAATTCCATCCGA 15748 35 100.0 39 ................................... ACTATTTAAGTCCAGAAGAAGCTGCGTCTAGGGTCAGAA 15674 35 100.0 37 ................................... CGGCGATGCCCACACCCGGTACCAATAGCCCAGAAAT 15602 35 100.0 38 ................................... ACTTAACTCCAACAGACGCAACCGAGAGAGCTAGGAAA 15529 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 99.2 38 GTTTCCGTCCCCGTAAAGGGGAAGTTAATTGAAAC # Left flank : TGTTGTTGTGAGAGGGACAACGTTAGTGTCATCAGGAACTTTGATGCCGAAGATGGGAAACTTCGCAATCAAAGGTTTTAGCCATTGAGGAAAGTTGGTTGCATAGATAACCACCAAAATTAGGAGAATCAGGATTGTGGTGATTGCAGCTTGCAGTATGGCTTTCTCAATACCCAGTTGTGTTTGTAACCAATCGCCAAAGGTTTCCCAAAACAAAGCAGAGAGTCCATCAGAAATCACTGTGAATAGCAGTGTACCAACGACAAATGAACTCAGAAAATTTTTGGTAGGGTCTGTGATCAGCTCGACAATCCGATTCTGCTTCATGGGTCTCTGCTTTACTTAATCTGTTGTGGTGATTTTAGATAGTTATGGAAGACCCTGATTTCAGTGGAAGAGAAGGAGTGGGAAGTGATAACAACCAACTTCCACTATTGACAAAGTAAAAGGAAAGTTTTTTGAACTATACGCAGATAACCTATCCCTTTCCGGACTGGATT # Right flank : CCTCCCATATTAGAACCCTGACTGGGAGAGAATTCGAGATAGCGAAATATGGGGGGGGTTAAAATTGACCCTAATAGTTGAGACTAATTATCAATAAATACCTCTCTCCATAGCCTCAAACCCTTATCCAGAGCGCTATATGGGGGGGTCTACGAAAAATAAGGATTTCAGCCCTTGCCTGACCCCCCCATAAAAGCGGCTGACGGAACTCAGCGAAGCCAAATTACTTGCTGGAAAACGTTTAGTTAACTAATCTTCAGTTGTCAAGGTACAGCTATTAGTACAATTACCCTAACCTAACGTTAGGGTATCCAAATTCTGGCTCAATGTCAAGCCACATTGGCAGCGGGGGAATGGTGGAAAACTTTTGCCGCGTTGCACTAGTCAACCGCATCAAAGACGATTTCAAACTCCGCTGCCGGCATAAACCGATGCAACATCCTCAAATGATCATGCGCGTCCTGGCGATTAAAAAACTTCGCAACTGTATACCGACGAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTAAAGGGGAAGTTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 4 30328-30580 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 30328 36 100.0 35 .................................... TGTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTG 30399 36 100.0 37 .................................... GTTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTA 30472 36 100.0 37 .................................... GAGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATC 30545 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 40 GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TTGGTCATGTCACAGTTAATGGGGTGGTTTGATTTCATCAGCCGTGGGGTAGCGAGGGATTATGCTGCCAAGCGCTTAATTTTCTACCTACATGAGGTTTGGCTACCTAGAAATTACTTGAATTTTCTCCTTTCTGGCTGAGTGCTGTTGTAGTTCTTACAATTTACACCCTGCCTGGAAGAAGCCTATTCCAGTAGAGCTAATGCTGTTTTTGTCTGGATTGACATAAGTAAGATTAGCTACTAGGCTACTAGCAGCTCCAAAATTTTGGGCTGTCGAACCTTGAAAACTTCATAAGAAAAATCGTTCAAGGAAGTAATCGACACCACTCGTTAAATCGCTCAAACCCTATGTTTTCCGTTGAGTGGTGTCGATGCTTTACAGGGAAAGGGTTTGAAGTATGTATTTTGCTCAATTTTTGGGAAGATACGTTGTAGTTTCCTGGCTGGTGTCGATTTGTCGTCTGAAACCCTTTCTCCATAAGGGTTCCTCAGCGAAGA # Right flank : CGAAAAGTTCAGGATAGCCTGAACGCTCCTTCTGTCACTTGAACCATATCCTGTCCAAAGTGGAAGCATAAGCTGTCCAGCGACAGGGGCAAAAACCCTGATGCTGTCGTAGGAAGAACAGTGGCTTTGGTAGCCAAGTAGAACTATAAATTGTCCCTAAGTTGAAATTGGAAGGATAAGATGTCCTGGAGTTGATAAACTGACAATATCCTCCCATTGCTGCCAGAGAAAAAATAAATGCTGGACGGCGAACAGTTTGTGCGGTGGTGTCAGCAGTTAGCCTTGGCAGAACCGACAAGGAAATACATCGAACTGTTACGCAGTTCGCCACCTGCGCGTGTGGTACGCAGTAGGGCAGGCAACGTGAGTGGTCGTTACCCCAGTCGAAAAATGGGCGTGACGATTCAATTTGAGAGCCACCACAACGAATTGGCAGGCATCTATGAAATGGAATATGACCCAGATGTGCTGGAATATTACGATCAACCCAGTGGGCTTAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 5 35746-35916 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 35746 27 100.0 46 ........................... TCATACCTAACATTAGGTATGGGTCACTTTTGGGTTTACACAAGCA 35819 27 96.3 44 .........................A. TGGTGGTTGGGGTGATTGTGATGCAGTTGTTCTTTCCGAAACCT 35890 27 92.6 0 ................C......T... | ========== ====== ====== ====== =========================== ============================================== ================== 3 27 96.3 46 CTTCCCCGCAAGGGGATGGAAACCTTT # Left flank : TAGGTTTGCTCTTACGAGTTTGTTGGTGTCTTTCTATTCCTTTAGTTGATTTCCTCACTGGCCGGGTAGTGATTGAGCAACCGCTATCGTTGAAGGTTTTGCCTATCACTCAACAAAGGAGAAAAACTAATCGGCGCTTTGATGCGCTGAAAGTACAAATGTTTTTAGAGGCAGCTTTGTCTTTTGAACCACCCCAGTCTCTCAAGCAAGTGGCTGCTACTATTGGATACGACCCTGGCGATATCTCCCGATTTTTCCCAGACTTGTGCCACCAAATTTCCGCTCGTTACAGATTATACCGACAAGCAATCAGAAAGTCCTAGCTATAATAATGCCATTCCCCAAGTCTATCTCCAGGTACTCGCAAGCGGTTCAAGTCTAGTTACCTCGTCCCACCACGTCGAAGTATAAAGTGACCACAGTTTTTTGGACAACTTATGCTTCCACTTTGGACAGGATATGGTTCAAGTGACACCTTCCAAGTCAAGTTTACGCAAGCA # Right flank : TCACAAACTGAGAAGGATATATAGCGATTCAGTCGAGCAAGGTACAGTTAGACCTAACCCCCAACCTCCTCACTAAAGCTCCGGTTCCCTGCTAGGGAAGGGGGTTAATTTCAAAGCCTCTCTCCTTGTAGGAGAGAGGTTTGGAGAGAGGTCAAAACTGTGCCATACACGAGCGAGAACTGCTATAAACCCTAACCTTCAAGAATCTTCAGACCTATGATAAAGCCCCCACTCCTTCTCCACATCAGCAGCAACCCTCTGCCGTAACGCCCAAGGCAAGAGAACCTCCACAAAAGGACGCCAAGCTTGCAGGCGCTGCAATACATTCGGGTCGCCCTCACGGTAAGTCGCACTATAGTAAGCATCCTGAGGACAACGAGCCAAAATCCCTAGCAGTGTCTCTCGCTCCGGTAGATGAGTTAGCTTTTTAATCAAACGTTTCGCCTCTGCATAACTCACCGACTCAAACGTCTCGTGGCGCACCGTCCCCTGAATGTATC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCCGCAAGGGGATGGAAACCTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 54504-55197 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 54504 23 100.0 47 ....................... CTTCATCGCCATCACGGGAGGGGCGGGGAGGAACTTTCCGCGAACTT 54574 23 100.0 56 ....................... ATACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCGCTTTCCGCGAACTT 54653 23 100.0 48 ....................... AACAGGTAACATGTTTGAAGCTACATTACCAAAACTTTCCGCGAACTT 54724 23 100.0 48 ....................... AGTTATTTAAACTCCTGTCATTTATTGCACTAGTCTTTCCGCGAACTT 54795 23 100.0 52 ....................... AACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTGCTTTCCGCGAACTT 54870 23 100.0 54 ....................... ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGACTTTCCGCGAACTT 54947 23 100.0 54 ....................... ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGACTTTCCGCGAACTT 55024 23 100.0 54 ....................... GTTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAACTTTCCGCGAACTT 55101 23 100.0 51 ....................... GAGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACACTTTCCGCGAACTT 55175 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================== ================== 10 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : TGTTGAGTCATCGAGAACTCCAGCCAGATGATTTTACAGAAAGTTTGGGGGCTTACCGCTTGTCGGAGGATGGACGAAAGACGTTTCTCCAAGCCTTTGAGCGCTTTTTGACAGGAATGCAGTGGGCTTCGCTGCAAATCTCTATGGAGAAGTTGATTAAGCCCTCTGAGGATTCGGTACGAGTTTACGTGTTGGATGCGGGGGCCTTGAAGCGTACCCTGACCTACGGTTCCCAACAGCCTCGCCAAGACACAACGATCATTCTATAATTGGGCTAGTCAAATTTTTCGTGGGTCAAAGCGGGGGCGAAAAACCGAGGAGTGCCACGAAAAACGCCAGAACCTTGACAATTAAATAGTTTGAGCATTTTCAGTTGCTCAGTAAATGAGAATGGGTTTCAACAAGTGGGACTGAAATGAGGGTGAAAAAGAGTCCCACGAAAATCATGGGTAGAACCCTCTGTCCGTCGATGTTTCAGATGGCGGACTTTCCGCGAACTT # Right flank : CACAAAGACCAACAATCAACCTATTTATAAATGTCACTTGAACCATATCCTGTCCAAAGTGGAAGCATAAGCTGTCCAGCGACAGGGGCAAAAACCCTGATGCTGTCGTAGGAAGAACAGTGGCTTTGGTAGCCAAGTAGAACTATAAATTGTCCCTAAGTTGAAATTGGAAGGATAAGATGTCCTGGAGTTGATAAACTGACAATATCCTCCCATTGCTGCCAGAGAAAAAATAAATGCTGGACGGCGAACAGTTTGTGCGGTGGTGTCAGCAGTTAGCCTTGGCAGAACCGACAAGGAAATACATCGAACTGTTACGCAGTTCGCCACCTGCGCGTGTGGTACGCAGTAGGGCAGGCAACGTGAGTGGTCGTTACCCCAGTCGAAAAATGGGCGTGACGATTCAATTTGAGAGCCACCACAACGAATTGGCAGGCATCTATGAAATGGAATATGACCCAGATGTGCTGGAATATTACGATCAACCCAGTGGGCTTAAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 60363-60607 **** Predicted by CRISPRDetect 2.4 *** >NC_019740.1 Allocoleopsis franciscana PCC 7113 plasmid pMIC7113.03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 60363 23 100.0 49 ....................... TAGCCTTAGAATGGGGGAACCTCTTCAGATTTCTCCTTTCCGCGAACTT 60435 23 100.0 52 ....................... CGGTTGACATCCTCCCACCGCTAATTCGGAGTACCGAACTTTCCGCGAACTT 60510 23 100.0 52 ....................... GGACGGCTGATCACAATTTGGCTAATGCGACCTTTGAACTTTCCGCGAACTT 60585 23 82.6 0 ...........T.AA......G. | ========== ====== ====== ====== ======================= ==================================================== ================== 4 23 95.7 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : AGGTTTGCTCTTACGAGTTTGTTGGTGTCTTTCTATTCCTTTAGTTGATTTCCTCACTGGCCGGGTAGTGATTGAGCAACCGCTATCGTTGAAGGTTTTGCCTATCACTCAACAAAGGAGAAAAACTAATCGGCGCTTTGATGCGCTGAAAGTACAAATGTTTTTAGAGGCAGCTTTGTCTTTTGAACCACCCCAGTCTCTCAAGCAAGTGGCTGCTACTATTGGATACGACCCTGGCGATATCTCCCGATTTTTCCCAGACTTGTGCCACCAAATTTCCGCTCGTTACAGATTATACCGACAAGCAATCAGAAAGTCCTAGCTATAATAATGCCATTCCCCAAGTCTATCTCCAGGTACTCGCAAGCGGTTCAAGTCTAGTTACCTCGTCCCACCACGTCGAAGTATAAAGTGACCACAGTTTTTTGGACAACTTATGCTTCCACTTTGGACAGGATATGGTTCAAGTGACAATAAATTTGAGAGCTTTCCGCGAACTT # Right flank : CTCTTGAGAGTGCGTTTCCAGTTAAAGCCATGATGTTCTGTTACCAGCACAAAGTCCTACCGCAACACCTTCCCACTCAACCGCCACGCCAGCCCCGTATACCGCTTCTGGTCTTTAACCTGATTCACCGCCATCGCCACCGCCTTTTTTGGCCCCACGATCACAGCCAACCGCTTAGCTCTCGTCAACCCCGTATACAGCAGATTACGCGACAGCATCAGATAATGTTGAGGAAACAGCGGCAGCACCACCACCGGATACTCACTCCCCTGCGACTTGTGAATCGTCACCGCCCAAGCCAAATCCACCTCTAACAAATCCGCATAATCATACGTCACCTGGCGTTGGTCAAACTGAACCCTGATTTCCTGCTCCTCATTGTCTATGGCTACAATCACCCCCAAATCACCATTGAACACCTCCCTTTGATAATCATTCACTCGTTGAATCAAGCGATCGCCCACGCGCAAAATCGTTCCTCCCCGCACCACCTCCGCTTT # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.45, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2087079-2087333 **** Predicted by CRISPRDetect 2.4 *** >NC_019738.1 Allocoleopsis franciscana PCC 7113, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 2087079 38 100.0 33 ...................................... AATGAGGCATTGAAGTCTGAGAACGCCGATTTT 2087150 38 100.0 34 ...................................... GCCAGATTCCACAACCACATCGCTAGTGTTCGGA 2087222 38 100.0 36 ...................................... GCAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAG 2087296 38 94.7 0 T.............C....................... | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 98.7 35 AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC # Left flank : ATTGAAAATTAAAACTTTTTAGTGTAATATATTATTCTAGCCGAATTTACTTTAAATTCATGAATTTATAAGGTTTTGCAGCCGTTGATTGCCCAGCTAATCAAGTCTATTGAGTAAAGCGGCAAAGTTTCCCAGACACAGTTTTCGTGGAAGACTGCCGCCGAGGACAAAACTTGAGTTTAAGGCATTGTGGAGAGGAATGACGCGGCAAACTGAATCGGTATCAATTTTGGTTGTCTTATCTCACAAGCTGCGACAACCTGTAGGTGTTTTGGAGCAGGGGTTAATTTTTTGGGCTGTATCCTTCACGGCACAAGGGTTTCAATCCTTTGTTCTCAAAAAGAGGTTGTCACATTTCTTGTAAGTCTTACTGAGCAAGGGTTTGAGCTGTTTTTTCTGGAGGGGTGTTGCTTCACCCTTGGGCTGAAATGATATACTCAGTGGAGGTTGTCACCAACGCACCTTGAAAACTAAATACAATAAGCTTTCTGGAGGTCAGC # Right flank : CGTAACATTGCAAATCACCCTGAGCATAATTATCAAATCTGAATTCCATAAAAAAATCAAAGCCTCTCTCCTCCTAGGAGAGAGGTTTGGAGAGAGGTCAAAGTGTACCGATCCAATTGAGAAGAGCTATAAATGCTCCCCTCCCCGTTGCGGGGAGGGGCTGGGGGAGGGGTTCCCCCGCCAAATTGCCAGCAGTATCTTTAACTGCAAGATGAATCTAGTTGGGCAATACAGGACGCCCTGCCAACATCGCTTTAGTTTGCGATTCACCAGCGCGTTGCAGTTGACGAGTCAACCGGACGTTGAGCAATACCAAAACAGTCCACTCACCCAAAAGCACCATCAATCCAGTTGTCGTAGCAGCATGTTCTATCGCTGCCCAGGGAAACGTTGACAGAAGCCACAGCGTGGCATTTTCCACAGGTTCAATACCCAGGATAGAGAGGCTCATCGGTGGCACAACCAGCAAAGCGGCAATGGTACCCACAGCCCAAAGCGAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 2916270-2917173 **** Predicted by CRISPRDetect 2.4 *** >NC_019738.1 Allocoleopsis franciscana PCC 7113, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2916270 37 100.0 36 ..................................... GTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATT 2916343 37 100.0 34 ..................................... GCTTCAGTAGAAACCGACTGGACAAAATACATGG 2916414 37 100.0 35 ..................................... TTCAAACCATTGAAGACTTGGTAAAAAAGGTTATC 2916486 37 100.0 34 ..................................... TGCCAGTTGATGCCGGTGGCTCGTGCCACCTCAT 2916557 37 100.0 39 ..................................... TAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGG 2916633 37 100.0 35 ..................................... GGCTGCTCGGACCAGATATCGGCGACATACTACAA 2916705 37 100.0 33 ..................................... AAAAAACAAGCAAAACACAAAGGAATTGCAAAA 2916775 37 100.0 39 ..................................... GAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGG 2916851 37 100.0 35 ..................................... ATACTTTTCCGACACCTCCATCACTTCTGTAGGTG 2916923 37 100.0 35 ..................................... GCAAGGACAATGTCGATTACTTCGTCGGGCTTTAA 2916995 37 100.0 37 ..................................... TGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAG 2917069 37 100.0 31 ..................................... ATTGCCTAGGGCAACCAAGTTATTCGGCTAA 2917137 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 35 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Left flank : TGCCAAGTTGCGATCGCGCCTGGGTTAAGATTATCAAACCTAAGCAGGATAGTATCCGCTTTTACTCCCATTGTGCTTGCTGCCAGGGTAAGGTGGAGTAATACCATTTCACTTTTAATCCGTTACACATCGACCCCCCTAGCCCCCCTTATCAAGGGGGGAACAAGAAAACTATCTGTAGCAAGCATTTAGTGAATTGGTATAAATCGCTGGTGAGCAATTGCGAGATAATTCGATTTTTTTGGCTTGATGGTGACAGTCGGTAGGTGTTTTCGGAGGTTGATCTGTTTTCGGGGCTGCATTCCTTACTCCACAAGGGTTTGCAGCTTTTGCTCTTTTCAGGAGGGTGTCACCGCTTCTGAAAAGCTTGCTGTGGTTAGATTTCAGCCGATTTTTTATTTTCCTCTTGTCCGTCTTTGGCTCTGGAATGATATGATTAGGGGAGACTGTCACCAACGTACCTTGAAAACTAAATACAGTAAGGGTTCTGGATGCCTGCG # Right flank : CGCTTTTATTGTCCACCTTCCGAGACTGCATCTGTTGTTGCCTCGCCTCTTGTCGTGCCCGTTTCTCCTCCGTGAGGTGATCAAAGCAGTAGGGACAGGAAATGCCTTCCTGATAATGGGGTGAGGTTTTATCAGCTTCAGCGATCGGATGCCCACAACTGCGGCACATCTCATGAGTTCCTGCCTCTAACCCATGCTCTACAGCGACTCGTTGATCGAAGACAAAACATTCTCCTTGCCACAGGCTTTCTTCGGGTGGAACTTCTTCTAAATATTTGAGAATGCCGCCTTGGAGGTGATAAACCTCTTGGAATCCTTGAGCCATCATTAATGATGTCGCTTTTTCACAGCGAATACCACCTGTGCAGAACATCGCCACCTTTTTATGCTTGCTGGGGTCAAGGTGGGTGCGAACATAGTCGGGAAATTGGCGGAAGGAGGTCGTTTGGGGATTTTGCGCTCCTTTAAAGGTGCCAATACTCACCTCATAATTGTTGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 3131505-3132053 **** Predicted by CRISPRDetect 2.4 *** >NC_019738.1 Allocoleopsis franciscana PCC 7113, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3131505 37 100.0 35 ..................................... TTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGA 3131577 37 100.0 39 ..................................... TTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAG 3131653 37 100.0 39 ..................................... TAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTA 3131729 37 100.0 34 ..................................... ATAATGTTATCTCTGACTTATCAAGCTTGTATTT 3131800 37 100.0 36 ..................................... ACATTGAATAGGAAGAGAAAAACAAAGACGGATTCA 3131873 37 100.0 36 ..................................... TTTTAAGTACGTAAGGTGCATTCATTTTTACTTCAC 3131946 37 100.0 34 ..................................... AAGCTTACACCTAAACAACAAACTAATCTCTTCG 3132017 37 75.7 0 .........................TC..C.CCGGTT | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 97.0 36 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Left flank : TCTCAATCAGGTGGATTCGGCGAATGTGTTTCACAACTGTTCTACCCGTTTTGCGGATGGTTTCCGCTATGGTTTTGGCGCAGAAGTGGGAATTAGTACCCAAAAGATGCCGCCGCGTGGGCCGGTGGGGTTAGAAGGGTTGATTACTTATAAGTATAAGGTGACAGGGAATGGTCACATTGTTGCTCCTTACGCGGGTAAGGATGCTAAGCCGTTCACTCATCGGGATTTTTAGGTTTTTTGGCTGTTTTGGTGACAACCAGTAGGTGTTTTTTGGAGGGGGTTCAAAATTGGGGCTGTATTCCTTATCCCACAAGGGTTTTAAGTCTTTGCCCTTCTCAGGGGTGTGTCACGGTTTCTGAAACCTTTGATATGGCTAGATTTCAGCGGATTTTTTATTTTACTCTTGTCATCCTTTGGCTCTGGAATGCTACTATAAGAGGTGTCCGTCACCAACGTACCTTGAAAACTAAATATAGTAAGGGTTCTGGATGCCTGCG # Right flank : TGATTTTTCTCCAGTCCGTCCTCACTAAAGCTCCGGCGGCGGACTTCGGTTTTATAGCCGCGAATTCCATTCGCCAGGGCTTATTTCTTCCGGAGTCGTCTTTAGACGAATGCGAGCTATTAGCCAGGGGTTTAAACCCTTAGCGAGTTATTGCGACTAGTGCAAGATCTGAGAAGACCTATTCTTCTGCCCTCCAAAGGCAACATCCCCAAGAAAAAACCCCAGAGCTCGTGAAAGCACTGGGGGAGTCATCAGGGTGTATCTACTTATTTCCTTATCCGTCATCCCTCGAACCATTTCCGGATAAATCGAGAAAAGTTCCATCCTAGCTTCAGGTGCATCCCTAGAACTCATTTATCCTTCTCCCCAAATGCCAATACACCCTTAAATAACATCAACAAACCGCCCACTAAGATAGCCAGTGCTACCCCACCGGCGACCAAATCCATTAAATGTGTTGTTTCCATAATTCTTTCCTAAAACTTCCGCATCCTCAAATT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 3860566-3859458 **** Predicted by CRISPRDetect 2.4 *** >NC_019738.1 Allocoleopsis franciscana PCC 7113, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3860565 37 100.0 34 ..................................... CAGAGCCAAACTAGAGAAATTCCTCCAGGATTGT 3860494 37 100.0 33 ..................................... TGATATCCTGCGTTTCACCGGTGAGAGAATGGG 3860424 37 100.0 35 ..................................... AGCCCGGTCATTTTTCGCCACGAATAGCCTTAAAA 3860352 37 100.0 34 ..................................... AGACACTTGGTTCTTAATGTCACGGGAAACGTTA 3860281 37 100.0 35 ..................................... AAGAACTTCACCTCTATCAAGTCCAAGGGCGATCG 3860209 37 100.0 33 ..................................... GACAGCGATTAAGATTTCATCTTGCCATTTGCT 3860139 37 100.0 37 ..................................... GCGGCGATCGATCAAGCCTCTGAATACGAGTCTTGGG 3860065 37 100.0 35 ..................................... TTGAGCGCCAATTAGGCAAACGGCTTTAGTGGTGT 3859993 37 100.0 35 ..................................... TGGCTTGGGCCAAAGAGCCTTTCCGAACGAGGAAC 3859921 37 100.0 36 ..................................... CGTGAAAATGATTCGTGCCCCTTTCTCCCGCTCCTC 3859848 37 97.3 37 ..........G.......................... GCAAGGACTTCCACTACAAGACGGCTCATCAACTGGT 3859774 37 100.0 34 ..................................... TCAATCGAGGTAGATGGCTTGTAGACTGCAAGTC 3859703 37 100.0 31 ..................................... AAATCGAGGCGTTTATCCGCTCTCACATGAA 3859635 37 100.0 33 ..................................... CGTTTGAAATTCAAGATGAACGAACGCCTTCCC 3859565 37 100.0 34 ..................................... TCTTTTCTGCTTGGTAATCATGATGCTTTCCTTT 3859494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.8 34 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Left flank : CATTCCAGAAGATAAGCGCCGCACGAAAATTCACTCGATTCTGAAGTCTTATGGGCAGTGGATGCAGTATAGTGTGTTTGAGTGTGAGCTGACCGAGACGCAGTATGCTAAGTTGCGATCGCGCTTGGGTAAGGTTATCAAACCTGATGAAGACAGTATCCGCTTCTACGGGCTTTGTGCTTGCTGTCAGGGTAAGGTGGAGCGAATCGGCGGTGAGCAACTGCGAGATAATTCGATTTTTTTTGCTTGATGGTGACGGTCGGTAGGTGTTTTCTGAGGGTAATCTATTTTTGGGGCTGCATTCCTTATTCCACAAGGGTTTGCAGCCTTTGCTGTTTCAATGAGTGTGTCACCGCTCCTGAAACCTTTGATATGACTAGATTTCAGCGGATTTTTTATTTTCCTCTTATCATCCTTTGGCTCTGGTATGCTACTATAAGAGGTGTCCGTCACCAACGTACCTTGAAAACTAAATATAGTAAGGGTTCTGGATGCCTGCG # Right flank : ATTTTAAACTGACAAAATGTTGTACTAATTGCAACAACCGCCAGTGGTTAAAACCACTGTCTAATAGCAAAAGTCGTCTAAAGACGACTGAATGAGTATTGTAGTCCACTTCAGTGGACTTAAACTATGAGCCGTGAACTTAAGTTCACGGCAGACTATCGGGCTTACTAAAGAATGGAGCAAGATCAAAACTCACTCATTTAGTAAAAAACATTAACCCTATATTTTATTCTGCCCAGAAGATTGACCATCATAAACCGTCATCACCGGTCTAAACCGCAGGAAAGCTGACAGAATTGCCAAAAAAGAATCCAACCCCCCAATGCGCTTACTCCGCTTCCACCAATTCTTCTCAGTATAGAGAATCTCGATAATATGCCGATTTTGTTCCGGCGTAAGATTTGTAAACCTCACCGAAACACTAGTAGAGTGATGTTTCCGCCTAGACTTAACAACTTCAGCTTCCAGAGAAACACCACCTTCTAAAAACTCCAACACTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 5 4580524-4580266 **** Predicted by CRISPRDetect 2.4 *** >NC_019738.1 Allocoleopsis franciscana PCC 7113, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4580523 36 100.0 39 .................................... TGCATCAATTACCAACAAATCGCGTTTATTGAGTTGCTC 4580448 36 100.0 39 .................................... GCAGCTTGATCTGCACGGATTTGGTCAGCTTGTTCTTTG 4580373 36 94.4 36 .....................A.G............ TCATTATTGTGGTATGGGTCACCAATCGCGCTTTGG 4580301 36 91.7 0 ...................C..........A....T | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 38 CTTCCCACTCGCTGGGAAAACTAATTGAATGGAAAC # Left flank : AGCTGATGAAAGCCTCCCTAATCAATTAAAAAAGCCGACTCAGCGTCCCACCCTCCGCTGGATATTTCAGTGTTTCCAAGCGGTGCATTTGTTAGTGATTGATGGGGTTGAGCAAATTGCCAATCTTACCGATGAACGCTTAAAGATTTTGCGCTTTTTCTCTCAAGCTTGCCGGGACTACTATCTATTGTGCTGAGTTCTTCAAGTCATTGAAATACTTCAACAATTATTTCAGCAAAGTGATGCGTAGACGAGCTTTTTAGTTAACGCATCAGGCTTTTCCTGATAGGAAACAGTTCACTTTATGTTGCCAGTTACTTGACTTTTTATTGCTACTTGCTGCTTTTTGAGAACAAGCACCCGAAAAAAGTTAGCATCTCTCATCTCTAGAACGTTTCACTCGATTGAACTGGCCTGTGTTAGCCTTCAGTTCCACACAATTATCCGCTTGTGACAGTCAAAGGGCGGAATGTGGGTTAATGCCCAAATCTATCTCTTTT # Right flank : ACGGCGAAAAAATCCCCCGGTACTGCCGGGGGATTTTTATTATTTTTAAGTCAAGAGTAGCTCTTAAAACGAATTGCGATCGCCTTAACAATCTCCCTAATCCAGTATCATCCTCAAGGTGAAGCAAAAACTGGAATGTTTAGAGGTGCTGAGGTCTGAGTGATGATTGACCACGACCGCTTATTCAAAGAACTCCTGTCTACCTTTTTTGTAGAGTTCATCGAGCTATTTCTACCGGATGTCATCGCTTATCTAGAACCGGATTCGGTAGCATTTCTGGATAAAGAAGTATTTACTGATGTTACAGCAGGTGAGCGTTATGAAGCTGATTTACTTGTGCAAGCGCAGTTTCGGGGAGAGTTGTCTTGTTTCCTGATTCATGTGGAGAATCAAGCCAAAGCACAAGCGAATTTTGGCAAGCGGATGTTTCGCTATTTTGCTCGGTTGTCCGAGAAATATGACTTGCCAATTTATCCAGTTGTGGTGTTTTCTTATGACCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCACTCGCTGGGAAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //