Array 1 45856-44224 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBME01000015.1 Neisseria meningitidis strain P4950 00001.P4950_scaffold22.1.0.547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 45855 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 45789 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 45723 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 45657 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 45591 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 45525 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 45447 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 45381 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 45315 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 45249 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 45183 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 45117 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 45051 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 44985 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 44919 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 44853 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 44787 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 44721 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 44655 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 44589 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 44523 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 44457 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 44391 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 44325 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 44259 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 25 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //