Array 1 55004-56171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZE010000013.1 Pseudomonas aeruginosa strain PA15-36 NODE_13_length_247931_cov_60.908628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55004 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55064 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55124 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55184 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55244 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 55304 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 55364 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 55424 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 55484 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 55544 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 55604 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 55664 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 55724 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 55784 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 55844 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 55904 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 55964 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 56024 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 56084 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 56144 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66824-64696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZE010000013.1 Pseudomonas aeruginosa strain PA15-36 NODE_13_length_247931_cov_60.908628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66823 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 66763 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 66703 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 66643 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 66583 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66523 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 66463 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 66403 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 66343 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 66283 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 66223 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 66163 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 66103 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 66043 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 65983 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 65923 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 65863 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 65803 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 65743 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 65683 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 65623 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 65563 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 65503 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 65443 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 65383 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 65323 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 65263 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 65203 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 65143 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 65083 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 65023 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 64963 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 64903 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 64843 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 64783 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 64723 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //