Array 1 63162-62234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSF010000035.1 Pseudomonas aeruginosa strain CCBH28717 35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63161 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63101 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 63041 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 62981 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62921 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62861 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62801 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62741 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62681 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62621 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62561 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62501 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62441 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62381 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62321 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7797-9201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSF010000073.1 Pseudomonas aeruginosa strain CCBH28717 73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7797 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 7857 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 7917 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 7977 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 8037 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 8097 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 8157 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 8217 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 8277 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 8338 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 8398 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 8458 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 8518 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 8578 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8638 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8698 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8754 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8814 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8874 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8934 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8994 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9054 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9114 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9174 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 216-1864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSF010000119.1 Pseudomonas aeruginosa strain CCBH28717 119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 276 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 336 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 396 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 456 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 516 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 576 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 636 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 696 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 756 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 816 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 876 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 936 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 996 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1056 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1116 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1176 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1236 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1297 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1357 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1417 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1477 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1537 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1597 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1657 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1717 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1777 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1837 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //