Array 1 24689-23202 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSV01000107.1 Neisseria meningitidis 96024 gnm96024.contig.106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24688 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24622 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24556 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24490 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24424 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24358 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24292 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24226 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24160 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 24094 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 24028 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23962 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23896 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23830 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23764 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23698 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23633 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23567 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23501 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 23435 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 23369 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 23303 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 23237 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //