Array 1 275565-274210 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDZQ01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N17-0343 N17_0343_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 275564 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 275503 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 275442 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 275381 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 275319 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 275258 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 275197 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 275136 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 275075 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 275014 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 274953 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 274892 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 274831 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 274770 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 274708 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 274605 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 274544 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 274483 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 274422 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 274361 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 274300 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 274239 29 96.6 0 A............................ | A [274212] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 293617-291697 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDZQ01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain N17-0343 N17_0343_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 293616 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 293555 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 293494 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 293433 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 293372 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 293311 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 293250 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 293189 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 293128 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 293067 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 293006 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 292945 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 292884 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 292823 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 292762 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 292701 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 292640 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 292579 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 292518 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 292457 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 292396 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 292335 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 292274 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 292212 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 292151 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 292090 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 292029 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 291968 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 291907 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 291846 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 291785 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 291724 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //