Array 1 294358-295118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNQX01000003.1 Escherichia coli 2-427-07_S3_C1 e242707S3C1.contig.2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294358 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 294419 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 294480 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 294541 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 294602 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 294663 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 294724 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 294785 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 294846 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 294907 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 294968 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 295029 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 295090 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320819-322311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNQX01000003.1 Escherichia coli 2-427-07_S3_C1 e242707S3C1.contig.2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320819 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 320880 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 320941 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 321002 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 321063 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 321124 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 321185 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 321246 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 321307 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 321368 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 321429 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 321490 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 321551 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 321612 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 321673 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 321734 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 321795 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 321856 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 321917 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 321978 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 322039 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 322100 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 322161 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 322222 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 322283 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGACTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89645-88152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNQX01000004.1 Escherichia coli 2-427-07_S3_C1 e242707S3C1.contig.3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89644 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 89583 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 89522 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 89461 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 89400 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 89339 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 89278 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 89217 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 89156 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 89095 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 89034 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 88973 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 88912 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 88851 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 88790 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 88729 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 88668 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 88607 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 88546 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 88485 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 88424 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 88363 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 88302 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 88241 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 88180 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGACTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116106-115345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNQX01000004.1 Escherichia coli 2-427-07_S3_C1 e242707S3C1.contig.3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116105 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 116044 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 115983 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 115922 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 115861 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 115800 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 115739 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 115678 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 115617 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 115556 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 115495 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 115434 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 115373 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //