Array 1 50111-50358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOCL01000033.1 Streptomyces silvensis strain ATCC 53525 53525_Assembly_Contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 50111 31 87.1 41 A........G...T...G............. TGCTACCGGGGGGGTGGACGCCTCCCAGGCTGAGGCTGCCG C [50114] 50184 31 100.0 41 ............................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 50256 31 100.0 41 ............................... TGCTACCGGGGGGGCGGMYGCCKCCSRGGCKGAGGCYGCCK 50328 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================= ================== 4 31 96.8 41 CCGGGGCGGAGGCCGCCTCCGGGGCGGAGGC # Left flank : CCCAGTTCCCCGCGCCCATCAATCCCCGGCTCGCGCTGTCGGCGTACCACGGCAGCCTCGGTGTGGACTCCGGTGTTCCGCAGAACGTGTACCAGCTGGACACGCGGAAGATGCAGAAGTTCAAGGACGCGAAGGGGGAGCTGCTCAAGCAGCGGCTCAAGATCGGCGAGACCATGAAGCTGCCGGACGGCGCGGGGTCGATCACCTTCGAGCGGGAGCTCAAGCAGTGGGCGACCTTCCAGATCTCGCAGGAGCCGGGCAGCGGCTGGGCCCTCGGCGGCGCGATCGCCGCGATCGCCGGGCTCGCCGGGTCCCTGTTCATCCAGCGCCGGCGCGTGTGGGTACGCGCGACGGTCGGCCCTGACGGGGTCACCGTCGTGGAGATGGCGGGCCTCGGCCGCAGCGAGTCCGCGAAGGTCCCCGAAGAGCTGGCGGCGCTGGCCGCGGAGCTGCACGAACGCGCGCCGGGCGCACCGGAGCAGGCGCCGCCGGCCTCCGGC # Right flank : CTGCYACCGGGGCGGCGGACGCGTCCCGGGCGGAGGCTGCCGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGGTGCCGGTGCCGGTGCCGGTGCCGATGACGATGACGGTCCCGGTTCCGACACCGGCTCCGCCGCCGCGGGTACCGGCCTCGCCGCTGCCGATACCGATCCCGCCGCGCCTGCCGCGCCTGCCGCGCCTGCCGCGCCCGCCGCTCCGGCGGACGGTGCCGTCGCGGGTGGCAGCCGTGTCGCCGATGACGCCGAGACCGCCGATGCCGACGGATCGGTGGCCGACGGTGCTGCTGAGCCGGACGGTGTCGCGGAGTCTGACGGCGTCGCCGGGCCGGACAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGACGGTGCCGCCGGGCCGGACGGTGCTGCCGGGCCGGACGGTGCTGCCGGGCCGGACGGTGCCGCCGAGTCC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGGGCGGAGGCCGCCTCCGGGGCGGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 302501-302027 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOCL01000034.1 Streptomyces silvensis strain ATCC 53525 53525_Assembly_Contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================== ================== 302500 25 100.0 36 ......................... TCCCTCGCGGTCGCTGTCGTCATCGAGTACCCATGC 302439 25 100.0 36 ......................... TCCCCTGTCTACCGATGTCCGCGCGAACTTGCAGGC 302378 25 100.0 7 ......................... AGCGACT Deletion [302347] 302346 25 80.0 35 ....C...T...T..TT........ TCCAACTTGGGTGCCCGGGCCATCAGCAGTGCGGC 302286 25 76.0 88 ..G.....G..A.A..T.A...... TATCTTCCTCCCTCAGCAGTTGAGTTGAAGGACGGTGCCCGCACAGGGGGAGCCACTCCCGGTTCCGGCCATGAGCATGATCTGCGTA 302173 25 76.0 34 C.......A..T.T..A.C...... GCCATCGCCTTCGCTAGCTACCGTCCGCTTCGAG A,T [302168,302170] 302112 25 80.0 36 A.G..........A.......G..G CCCCTGGGCCTTGTGTCTAACCAAGCGGATAGCGCA 302051 25 72.0 0 ..GC.........A...A...A.AG | ========== ====== ====== ====== ========================= ======================================================================================== ================== 8 25 85.5 39 GTCGTCCCCGCGCCTGCGGGGCTGT # Left flank : GCTGTGGTGACCGTCATCATCCTCGCTAACTGCCCCGCCGGCCTGCGCGGATTCCTCACTCGCTGGCTCCTGGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCAGCGCCCGCATCCGCGACCACCTGTGGGACGAAGTCCGCCAGTACGCCAACCAAGGCCGCGCCCTCCTCGTCCACCAAACCGACACCGAACAAGGCTTCACCTTCCGCACTCACAACCACGCCTGGCATCCCACCGACCACGAAGGACTCACCCTCCTCCACCGCCCAGCCCCTCAAACCACCCACCCGGGAACCGACCGCCAGCCCAAGCCTCCGAAACAGAACTGGAGCAAGGCCGCTCAACGCCGTAAGTACGGCCGTCGCTAACCGATCAAGCCCACACCCGCACAGACAGATCGGCGCCATCCATGCGTGAAGAGATACGAGTTATGTCGGAGTTCTGGGAAGTAAGTAAAAACCACCATCTCGCCTGACAAAGCCGCTGGTCACGGCCT # Right flank : ACGCAAGTCGTGGTTGGCGGCTAGTTCCCGCTCGTGTGTCCCCTGGCTGCTCCCCGTGCCCAACGAAGAAAGCACTACCGCAATGCTTCGCACATGCCAGTCTAGCTGGGCACGGCCACATTACAGCGGCAAACGACTGCAGGAATTTAGCACTCTCCGCCAGACACAGCAGTTTCAGTTTCGGCCCTCTCCTCACCTCGGCTCGAAGCTCTGCGCAGGGCTTCTCACCCATGCGGATGGTGTAGGAGATCGTCGGAAGCCTTGGAGACGCCAAGGCTTCCCGCACCTCTAGGGCTGGGATCCCACATACGTCCCACAGCTTGAAGGGACACGGCCACGAGCTCCCGGGTTTGCGCAGGTCAGCTGCCGTAGCGCAGAAGGCAGAGCAAGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCTCTTCGTAGATCCTCCTTCGGGAGGGCTCCTTTTCGTCCGCTGGTCGGCGGAGGAAGAGGGGCA # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-1.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGCTGT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 318898-320023 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOCL01000034.1 Streptomyces silvensis strain ATCC 53525 53525_Assembly_Contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 318898 29 100.0 32 ............................. GGCCCCGGCCGGAGTTCGCACCTCCATATGGC 318959 29 100.0 32 ............................. GATGGGAGATTCCCCCTGCGGATCACCGCTCG 319020 29 100.0 32 ............................. CGATTCACGCTTCACTCTGAGGAGAGATAGAC 319081 29 100.0 32 ............................. TCTGCGAGGGACTGAACGAGGGCCGCGCCGGA 319142 29 100.0 32 ............................. GACACCGTCGGCCAGGTCTTCCCCCTGTTCCA 319203 29 100.0 32 ............................. CCAGGTATGCCCCGCCCGGCAGGCGGCCTCCA 319264 29 100.0 32 ............................. CGCGGCCCCTTCCTCGTCTTCATGGGCCTCGG 319325 29 100.0 32 ............................. GCTCCGCCCGTCTCACTGCCCTGGCGGGTGGC 319386 29 100.0 32 ............................. CACAACAAACCAAAAGGAGTAAGACATGTCGT 319447 29 100.0 32 ............................. GGCATCTGCGGGTAGTCGGCGCGGAAGGCGAA 319508 29 100.0 32 ............................. CCGAGCTTCTCTGAGATCAGTCTCGTGGTCGA 319569 29 100.0 33 ............................. CCCACCCTTGCGCACTGGGCAGTGCGCTACGGT 319631 29 100.0 32 ............................. AACGCCACGAAGACCCTGGCTGTGCCAGCGAA 319692 29 100.0 32 ............................. AACCTGCCCGCGCTCGAAGGCGGGGACGAGCT 319753 27 93.1 32 ........--................... GTCCCTAAGCGTCTCGCGACGGGCCCGCCCCT 319812 29 100.0 32 ............................. AGGGAGTGCGTGACGTAGATCGTCACGTCGTT 319873 29 96.6 32 ...........A................. AGGTCCATTGAGGATGTGATCAAGATCCTGCC 319934 29 100.0 32 ............................. TGTCGTCGCCGGAACCGGCCGGTCGGCAACCA 319995 29 93.1 0 ............T....A........... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.1 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ACGCGGGCAGTAACGGGGCCGAGGACGATTACGGAAACGAACTCTGGTGACTGTCATCGTTCTCACCAACTGCCGCGCCGGTCTGCGTGGGTTCCTCACCCGCTGGCTGTTGGAGATCTCTGCAGGGGTGTTCATCGGCAATCCCTCGGCCCGCATCCGCGACACCCTGTGGAACGAGGTCCAGCAGTACGCCGGTCAGGGCCGCGCCCTCATGGCCCACACCACCAACAACGAGCAAGGTTTCACCTTCCGCACACACGACCACGCATGGCACCCGACCGACCACGAAGGAACCATCCTCATCCGCCGTCCCGACCCCAACGCCCCGGCCGTCAGCCAGCCGTCCTCATCAGGTCCGCCGGCGGGCTGGAGCAAAGCTTCCAAGCGCCGACGCTACGGACGCCAGTAAAGCGAGGGTGTCCCCTTTGGTGAAAATGCCCGAGTTGGAGAAAGTCATCAGAAACGGGGCCTGCGCTTAGAAGACCCCCAGGTCATTCAGT # Right flank : CCAGTGCAGTCAAAGCGGTGGGGGGCGCTGTCAAGTGACTCGGTTGAATGACAAAGTGCAGCAGTTCGCCAGTGGCAGACAGGAAAGATCGCTGAAGGGCTGGTGGACGCCGCAGGGGCATGTAAACGTAGACGGCCTTCCCCGAGAACTGCAGTTCAAAGAGGTGGCACCGGTGGTCGTGGACGTGTCCGGCTACCGCACCCGTTTGGCCAGCGACGCGCTTGTGGAGAGTAGCGCGGCCCGTTTCCGCTGAGGCGAGACGTCGTCCCTACTCGCGTGATGCCGAGGCGCGCACGTACGGCACACACCCTGCCCTCGCCCCCCTTGAGGGGCGCCCGTTACTGCAAGGAGATGCCTTTTGGCCCCGGAGCTGACCGTCGGCGACTTGCTGAATGGCCTGTCCGCCGGCGATCGCGACGCGATGATTCGTTTGTGGATCAACCCCTTCGCCCGCACGTCCCGCCGCATCGGCGGCGTGGTCGCCACGCGTGACGATGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136094-135566 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOCL01000052.1 Streptomyces silvensis strain ATCC 53525 53525_Assembly_Contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 136093 29 93.1 32 .............A...........C... AGCCTCGCGCTGGGCGGCCTGGGCTCCGGCAA 136032 29 96.6 44 .............A............... ACGAAGTCGCGGAGAGGCTGCGGGATGGGTGCCCGGTTGACCTG 135959 29 96.6 32 .............A............... GGCGAACCCATCCGGGAAATGGACCTGAACGA 135898 29 96.6 32 .............A............... ACCATCAGCGAGGTCATGCGCCTGGCGAAAGC 135837 29 100.0 32 ............................. GTGACCGTCCGGCCCTTCTTCGAGTGCGGCAG 135776 29 100.0 32 ............................. GTGATGGACCCCTCCGCGGAACTCGCCGCCGC 135715 29 100.0 32 ............................. GTCAACCGCGCCCTGGCCGACGGCGCGAAAGG 135654 29 96.6 31 ............................G CTGGCCCCGACATTCGGTAGGGCGTGCGTGG C [135628] 135593 28 82.8 0 ...-.......AT....A.......C... | ========== ====== ====== ====== ============================= ============================================ ================== 9 29 95.8 34 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGTCGAGGGACAGCAGGGCGCGGAGCCGTCTCATCTGGTGCCTGACCTGCGCAGATCGTGATGCTTCTTGGATTTTGCGTGATGCTGGCCCGTGGGCGGGTTGGACCTTGCCTCTGGGAGGAACCGTTGTAGCCAGGAGGGTGCGGCCGTTGGCTCGTGCCAAGTAGATGGCTGGAGGTGTGGGGCGGAGGTACTGGTGCCTCTGGGCTGGTGGCAGACCAACTCTTCCGCGGTGGTGGGTGGGTTGGGGTGAGGGTGGAGTCTCATGCGGGCCATCCTTCTTGCAAACTGTTCAGCATTCGCTGACCGTTGAGGTTGCCGCAGAGGTGGTCGGTCCGTGGTCCCGATCCGGTCCGCTGGGCGGCTGGAGCGGGGCGTCCAAGTGTCGGTGTTGCGGTCGTGGGTAATGCGGGAGATATGCCTTCTCGATGCTTATGCCGGAGTCGGGGAAAGTGGTGGGAATCAGGGTCTGGGCTTAGGGAACCCGCAGGTCAATCAGT # Right flank : AGGCTTTCGGGCGTGTCTAGGCCAGGCGCGTATGGAGATCCTTTCCGGGCGCAAGGTCCGGACGCCGACTGGCAGACGCGTGTGTGACCTGCACCACGCCCACCCGTCCACCTGGCTCAACGGCGGCATCCCGCCGCCCAGGTTGCTGCGTGGGCGGACAACAACGTGTCGCCCGCCCGTTCGCTGGTCATCTATGCGCGATGCATCGTCGGCCAACTGGCCGACTACCTGAAATGGGTCGAAAGATTCCAAGACCTACCAAAGGCCGCGACGTGATGAGCGACCCCGGAATCCTGCGAAGTGCGGGCCTCGGGGCCGCTTCGCCATGTGCCGTAAGGGGTCGAGATGCCTGCTCAGGCGCTCGATTCTGTGGGACGCCTGTGGGACGGACACCCGTAGAAACCCGGTTTTCGCCGGTGTCAGCCGGACTCTCCCCTCGGCGGAGGGAAGGAGTCCGATTTGCCTCGGCGGTCGGTCAGACGTGGTCTGACCTGCCAAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 140140-139561 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOCL01000052.1 Streptomyces silvensis strain ATCC 53525 53525_Assembly_Contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 140139 29 100.0 32 ............................. AACTGACCGTCTCGGGCAGTACGGCCCTCTGA 140078 29 100.0 32 ............................. TCGCGGCGCGGGCGGTTGGTGCCGTTACGGCG 140017 29 100.0 32 ............................. CACGACGTACACCGTCGAGGCCCAACACGTCC 139956 29 100.0 32 ............................. GCCACCGCCACGACCAGAGCACAGATGATCAG 139895 29 100.0 32 ............................. CGCCCGTCCACGTTCTGGTAGATCGCGCCGGG 139834 29 100.0 32 ............................. GCGCCGTTCGACTTCACGATCCTCGATCGCGA 139773 29 100.0 32 ............................. CTCGCGCAACAGGACATGACCGCGGTCCGGCT 139712 29 96.6 32 ................C............ CTGGAGGACGACACCTCGTACGACACCAACGG G [139695] 139650 29 96.6 32 ................C............ ATGGCGGCGGCGGGAACGCTGATCGGCGAGCC 139589 29 93.1 0 ................C........C... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 CTGCTCCCCGCGCACGTGGGGATGGTCCC # Left flank : GCTGGTCGCGACGCTGTTGCTCCCCGCAGCCGCGGGAGATGGTCCCACCAGATTCCTCGTCTATTGCTGGTACAGCCTGTGTATGGTGCCTGACCTGCGCAGGCCGTGATGCTTCTTCGATCACTCGTGACGCTGGCCCATGGGTGGACCGGATCATGCCCCTGGAGGACCGCTGTAGCCACGAGCGGCGCGGCAGTCGCCGCTTGCCGAGTAGATGGCTGGAGGTGCGGTGCGGAGGCGATGAGGCCGCTCGACTCGTGGCGGCCAGCCCTTTCGGGTAGCGGGTAGGTTGAGGCGAGGGTGAATTCTGGTGATGGTCATCGTTCTTGCCAACTGCCCAACATCTGTTGTCCGTGAAGATGTCCGCAGAGGCCGTCGGTCCGCCATTGGCATTGCAGCCTGAGCAATGCGAGAGATGTTCCTTTTCAATTTATATGTCGGAGTCGGGGAAAGTGGTCAGAAACAGGGTCTGGGCTTAGGAACACCGCAGGTCATCCGGT # Right flank : GTCGGTCGCCGACGTGGGCGTCGGCCTTGTTGCTCGGGTGGGCCGCGGTTTCCGGGGGGAGTCGGTCCTGGCGGGCCGCTGTGCTGAGAGGTGTTAGGCGGGGGTGGGTTTGTCAGATGGGCAGTGGCCAGCTCGGTCCGGTGGGGGAGTCGATCCAGACGGTCTGCTCGAAGGGGGTTGCGGTCATTCCGAAGCCTGTGAGGTCGGGTGCTCCTGCGTCCTGCCAGTGCCCGAGGGCTGTTTCGACCTGGTCCCACAAGCGCAGCGGTCCGTGCTGGTGCACGGTCCATCCCTCACCGCCGGGTGCGGGTTCGGTCCATGCCTGGGAGCCGGTCGCCACGTCGCGCAGGATGATGCCCAAGTGGGTGGTCATCAGCTCGGCGGAGGGGGCCGCGAGCTGGGCGACGAACCGTCCCGCCCATTCCTCAAGGAGCGCGGGGTCCCGCAGCGCGCGCTGGGTTTCACCCTCGAGCCGGAAGAAGCGTGGGGAGGGGGGCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGTGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //