Array 1 98076-100178 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOX01000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABB1162-2 NODE_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98076 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98137 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98198 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98259 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98320 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98381 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98442 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98503 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98564 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98625 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98686 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98747 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98808 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98869 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98930 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98991 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99052 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99113 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99174 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99235 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99296 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99357 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99418 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99479 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99540 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99601 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99663 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99724 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99785 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99846 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99907 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99968 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100029 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100090 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100151 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116311-117115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOX01000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABB1162-2 NODE_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116311 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116372 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116433 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116494 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116555 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116617 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116720 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116781 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116842 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116903 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116964 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117025 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117086 29 96.6 0 A............................ | A [117112] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //