Array 1 99418-100377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCY010000008.1 Bifidobacterium bifidum strain D31t1_170403_D8 NODE_8_length_100448_cov_60.1436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 99418 36 97.2 30 T................................... ATATCTAACCACGAATATAGTTAGACATGA 99484 36 100.0 30 .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 99550 36 100.0 31 .................................... AACCATAGGGGGTTACTGTGCCACAATAAAA 99617 36 100.0 30 .................................... CAAAACACAACCGCGCAGACGTTCCAATGT 99683 36 100.0 30 .................................... CGTGTTGGTTTGACATGTGGTGTGTGTTGT 99749 36 100.0 30 .................................... GGTACATACGGAATGGGTCAGCAAGCATCA 99815 36 100.0 28 .................................... TGTTGTTCCTTTCGTGGGGGGGGGGATG 99879 36 100.0 30 .................................... ACAGGTGCACGTGGTTCCGCACGTCTGGGA 99945 36 100.0 30 .................................... TCGAAGCATCCTTCAAGGAAGGAGAGCGAA 100011 36 100.0 30 .................................... TACGGGCATGTGACGTAGTAGGTGCCGACG 100077 36 100.0 30 .................................... CATCTACACACGAGCACTCGGCAGCGAGGC 100143 36 100.0 30 .................................... CTATATCCCGAGGGCTGCCTGGCCGATTGT 100209 36 100.0 30 .................................... ACCAGAGCGGACATGTGCGGAGCAGACCTG 100275 36 100.0 30 .................................... GCGTCAACGAGTGAGAAATCGGAATCAACA 100341 36 94.4 0 ..................................TA | T [100371] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.4 30 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Left flank : TGGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCAC # Right flank : TTTGACTCGTTGGGGTCCGGGGTTATTGCGTTTGGGGGCCATTATGAGTTTTGGTGGTTATTGCGTTTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 25249-27726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCY010000012.1 Bifidobacterium bifidum strain D31t1_170403_D8 NODE_12_length_27843_cov_59.8033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25249 36 100.0 30 .................................... ATTCATTTCATCATAATTATCACTGTTACG 25315 36 100.0 30 .................................... ACGAGGTCGCTCAGGCCAATGAAAAAGTGG 25381 36 100.0 30 .................................... CCGTACGCTCGGCACGCCCTATGCGTCACA 25447 36 100.0 30 .................................... CGCAACTATGGATTACCAGTACAGAGGGCA 25513 36 100.0 30 .................................... TAGGCATCGAGGCGGACAATCGGAAACTAG 25579 36 100.0 30 .................................... TTGATTACTGCATCGAGTACGCCAATGACA 25645 36 100.0 30 .................................... TGTAGGTGCCTCGGTTTCCCGCTTGGGCGC 25711 36 100.0 30 .................................... CATCGTTGTTTTTCAGCATACGGCCCGCTA 25777 36 100.0 30 .................................... CATCATTGTTTTTCAACATGCGCCCCGCAA 25843 36 100.0 30 .................................... CAAATCGCGCCACGCCATGTTGACATTAGA 25909 36 100.0 30 .................................... TGCCTTTGCCCCCTCCCCTGACGATGCCGA 25975 36 100.0 30 .................................... TGCATGGTGGAGGACATGCCGTACATGCCG 26041 36 100.0 30 .................................... TTCGTTCATCTCGTCGATCTTGTCCAGTAC 26107 36 100.0 30 .................................... TGGGGATATCGTACGATATGAGCGTCGCGA 26173 36 100.0 30 .................................... ATTGCTTTTTCCACTGCTGCCGCGCTGTGT 26239 36 100.0 30 .................................... GACATTAACCGTATTTCTGGCGTAGTTAAT 26305 36 100.0 30 .................................... AGCGTGTCGCCAGATCGTACGACGTACGTG 26371 36 100.0 30 .................................... TTGTCGTGTTTTCGGCGTGTCGTGTTTGTG 26437 36 100.0 30 .................................... TGGCGGTGGAGCAACCCGCTCAGCGTTTTT 26503 36 100.0 30 .................................... CTGCCTTATCCAGCTGAAACACCGAGGACA 26569 36 100.0 30 .................................... CCGCGCGTAGAACAGTTCTTCATTGGTCAA 26635 36 100.0 30 .................................... ATGGAGCGAATGCCAGCAACAGTGCTGTGA 26701 36 100.0 30 .................................... CACGCCCACGCCAAGCCAGCCGTCAACGGC 26767 36 100.0 30 .................................... AGTATAACGCACTCAACGTCACCGATATTC 26833 36 100.0 30 .................................... ACAGCGTCAACGCATCCAACGGCAACGCTT 26899 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 26965 36 100.0 30 .................................... CTGCTGGGCTCCCGTTACGGTGAGGTGATG 27031 36 100.0 30 .................................... TGTGTATGAGACGGCAAGATGGACTGAGGG 27097 36 100.0 30 .................................... CATGCCGAAGTTCTGTAGCTGGCTGCCCAC 27163 36 100.0 30 .................................... TACACGATGCGCACACGCGCTGGTCATGTG 27229 36 100.0 30 .................................... GCGGGATTCTTCCGGCAGAATCTAATCTCT 27295 36 100.0 30 .................................... GCTGATCCGCGACGGCGTGCTTGATTCGTT 27361 36 100.0 30 .................................... GTTCAGGAACTTCAGGTGGGTCACATCGTC 27427 36 100.0 30 .................................... ATGACTGTCGTGATGTGGTCGCGTCGTTCA 27493 36 100.0 30 .................................... CACCGTCGATGTATGACGGTCGGAGTCCCG 27559 36 100.0 30 .................................... CGGAGCCAGTACGGTACGTGCTGATATGAC 27625 36 100.0 30 .................................... CGTCTTTAGCCGCGGAACCGGTGGAAACGC 27691 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : TGCTTGACGGGTACAACGTGATAGGCGTGTGTTTCAGATGTGAATATTCGTAGCTTTTGAGGCCACTGGTTATTGTGTTTGGAGGCCGGGGTTATGGTGCGGGGAGGCCGGTGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //