Array 1 110893-110375 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWR01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4873 NODE_9_length_119569_cov_74.157807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110892 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 110831 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 110770 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 110709 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 110648 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 110587 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 110526 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 110465 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 110404 29 93.1 0 ............TC............... | A [110377] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8873-7320 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWR01000076.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4873 NODE_76_length_14285_cov_76.068227, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8872 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 8811 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 8750 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 8689 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 8628 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 8567 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 8506 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 8445 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8384 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 8323 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8262 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8201 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8140 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8079 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8018 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 7957 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 7896 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 7835 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7774 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7713 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7652 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7591 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7530 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7469 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7408 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7347 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //