Array 1 9437-7088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWHQ01000012.1 Plesiomonas shigelloides strain GN7 Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9436 29 96.6 32 .............T............... CACTATACGGGTTTGCTTGAGTGCCGCTACAC 9375 29 96.6 32 .............T............... TCATTAATACACGTGACGTGTCCATTTTGCAA 9314 29 96.6 32 .............T............... GTAGCGGGATCACCATCAATCGAACCATGGTT 9253 29 96.6 32 .............T............... TTGGAGTCTGGTGGCAGTATTGAGAAGCGCAG 9192 29 96.6 33 .............T............... CGTTGAACGCCTCGTATGGTAATTCAAATAATG 9130 29 96.6 32 .............T............... GTGATTCAAATGGAAATGAAAAAATTGTTCGG 9069 29 96.6 32 .............T............... CGTAATAGCGTTTCGGATTATTCATCGAAGGA 9008 29 96.6 32 .............T............... AATATCTGCCCACGGGTCAGCAGGACGGGCAG 8947 29 96.6 33 .............T............... CCTTAGTGTTAGACGCCTCCTTGGTGCGCTTAT 8885 29 96.6 32 .............T............... ACGAATTTAAACAGGGGTGGCGGCAATGTTGA 8824 29 96.6 32 .............T............... CAATTCCGTTAAAATAAAAATATCGACATTAA 8763 29 96.6 32 .............T............... GGTTTTTCGCGGTACGGCACTCGTTTTAGTGT 8702 29 96.6 32 .............T............... CAGCTGAGCGTGGCGATAAGCGGCCAATTATC 8641 29 96.6 32 .............T............... ACATTTAGCATCTTCTTTGCCAAGAACAACAC 8580 29 96.6 32 .............T............... CAGCGCATTAATAACGCGCCCATTTCCAGTGC 8519 29 96.6 32 .............T............... CGTTCAGCTCACCCGCACCGCTTGACCAGCGT 8458 29 96.6 32 .............T............... ACTGTTGGCAATGATGCCGGGGCATTCACCGA 8397 29 100.0 32 ............................. CCAACTCGCGTGCTGAATCATGATGGTTCTGA 8336 29 100.0 32 ............................. CAACTGGTCGGTGGTGCTTTCTCACGGATCAG 8275 29 100.0 32 ............................. CCAACTCGCGTGCTGAATCATGATGGTTCTGA 8214 29 100.0 32 ............................. TTGAAGGCCAAGAAATTCAGGATGTCTGTTAG 8153 29 96.6 32 ...T......................... AATTACCAAAGCGTGGCGGGTGGCCACAATGG 8092 29 100.0 32 ............................. ACCTGCGCGCCGCAATGCCCCAGACTTGCTAT 8031 29 100.0 32 ............................. CGCGCATTTGACGACAGCAAGAAGCAGCAAGA 7970 29 100.0 32 ............................. GGTGCAGATACCACCAACCTTCCGGTGGGTCG 7909 29 100.0 32 ............................. CACCTTCCAAACCCTTTCACCCGATCGAACAT 7848 29 100.0 32 ............................. GAGGTATACTGTGGCATTAGGTAACTTCTCAA 7787 29 100.0 32 ............................. ACCCTTGGAACCCTACCTGTCATTCCTGTTCG 7726 29 100.0 32 ............................. AATGGCCGTGCTGTTGGCTACTGGGTTGAAGA 7665 29 100.0 32 ............................. CTCTCAGGCGTTCGTCATCGCGATGCTGGGAT 7604 29 100.0 32 ............................. GCATGGCGCAAATCACCTTCATTCAGTGGCTC 7543 29 100.0 32 ............................. GACGGCTATTTCACTCATAACATTGTCACGCT 7482 29 96.6 32 .............T............... TCGAACTACCGAGTTGCGGCCATCGACAAGGA 7421 29 100.0 32 ............................. GGTTATGTTTAATACCGCGCTGGCAAAATCCC 7360 29 100.0 32 ............................. ATTGTTGAGATCGATAGTGCTCATGAAGTCCT 7299 29 100.0 32 ............................. ACACCCAAGCGGCGATCAGTGCGCGATTGCGT 7238 29 100.0 32 ............................. AACACCGGCCTGAGCTTCGTTACACAGAAGCC 7177 29 100.0 32 ............................. GGAATACGCCAGAAGAAGCCTACAGGGGATAT 7116 29 89.7 0 ...T.........T.....T......... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.1 32 GTGCTCCCCGCGCCAGCGGGGATGAACCG # Left flank : CCGTTAATTGAAGATGTACTCGCTGCCGGAGGCATTACACCACCTGAACCGCCCAAAGATGCCCAGCCGCCTGCAATTCCCGAACCGACAGGTATGGGGGATGTCGGTCATAGGAGTCAATGATGAGTATGCTGGTTGTGGTGACTGAAGATGTCCCTCCGCGTTTGCGTGGGCGGCTTGCTATTTGGCTACTGGAGGTGCGCGCGGGTGTCTATGTGGGTGACGTTTCCCGCCGAGTGCGAGAGATGATTTGGCAGCAGTGTGAGGCTTTGGTCGAGCAAGGCAATATCGTAATGGCATGGCCCTCCAACAATGAATCGGGGTTTGAGTTTCAAACTTTAGGCTCTAACCGAAGAGTTCCGGTAGATTTGGATGGCTGTCGGTTAGTCTCATTTTTACCTATTTAAAATTAATAGGTTATCGTTCATTAACAATCTGGATTTGTTGGTGGCTTTTTTATGAATTGAAAAGGCTATTTAAATCAATAATATCTGTTAAGA # Right flank : AACTCACCTAGTGGTTATCTAGCGATTCCCTGAGCTATTGCCAATTGCAAGCACATAGAGCGTTGCCGGAGGGTTCTCGATGCAGAGCTAATTAAAAGGTCGATAGTCTGTTCGACGTAGTTTTGTGCGGGGCGAGGAAAACCATATGTCGCTAGCGATAAGAACAACGGAAGTTCGAGCTCATCCGTCGGTGATTGAGGAATAGCAAACATAGTGGGTCACCATGCATTGTAAGTGCACACAATACGCGACGCTGTGCCTTTCAGATACAGAAGCACTCCGAACTTTCTGGGGGCGCTGTTTATCAATGTTTGAGTTGAGGCGATTTGCGCTCGATGAACATATTTCTCTAAAGGCATATGTGAGCGAAAGGAGAGTCGCATCAAACTTTGAGCAAAATGTTTATATGTGGTCTATAGCGTGTCAGCTGCTGGGCCCTGTGTTGGGCCCCAAGCTAAAAATAGGCTTTTAGCACGATGAGGGTTTGTTATAACTCATTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : GTGCTCCCCGCGCTAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //