Array 1 37737-37564 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNF01000011.1 Alysiella filiformis DSM 16848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 37736 33 100.0 39 ................................. GACATTACTTTTCTGAGGATGTTTAATGCACCATTTAAA 37664 33 97.0 35 ......G.......................... GACTCAGAGTTATACTCTTTTACGACATTATCTTC 37596 33 97.0 0 ..............................A.. | ========== ====== ====== ====== ================================= ======================================= ================== 3 33 98.0 38 GTCAGAATGATTGCCCCATTCATCGGGGATTAA # Left flank : CATGCGGCGCGTGTCCACCATTGCCCAGCTTTATTTTAACGCGCCCTTGCAAGCCGACTATGCCGCATTGAGCGCACAAGCCGCCACCCTGCGCGGCGAACACACATGGCATTGGCACGATTGGCAACGCTATTCCAACCGCCAACAGCAAATGATGAAATTGGGCGGCATTATGGGCGAAAGCGTGTGGCGCGATGTACCCCGCGAATGGGCGGCATTGTTGCACATAGGGCAATGGCTGCACATTGGCAAAGAAACCGTGTTTGGATTGGGTGGCTACCGCGTTCAGGCTGCTTGAAAAAATAGGGCTTGTCAATTTGAGTAAATTTGCGTAAAATGCGCGACACAATCATTCTGACAAAGGCTGATGTGATTTGTCTCGTTCTGGTTGTTTTCTCTGTTCAATTTTGTTAAAAAGTATATTCGTTTGTGAAGATTTTTGGCATAAAAAATTCAGCTTATAAGTATATGATTTTACAAGGTGAAAATAAGAGAGTGCA # Right flank : AAAACCAAGTCAGGCAGTCTGAAAACAAAACACCGTTTTCAGGCTGCCTGATTTTTTGCCCCCATTTTGATGCACACAAATTTGTTTTGCTCACGCAATGGTCGCGTTTTGGCGTATGATTTCATTTTCAAATTTCAAACAAGGGAATGGCAAATATGGCAACTTTATTTGTGTCGCGCCACGCTGGGGCGATTGAATGGATAGCGCAGCAAGCCCATTGGCACATTGACGAAATCGTGCCACATTTGGATTTGGCACAAGTGAATGCGGGCGATGTGGTGGTCGGTACGCTGCCTGTGCATTTGGCGGCGGCGGTGTGTGAAAAAGGGGCGCAGTTTTACTTTTTGCAAATGCCCCAACAGTTTGCCACGCGCGGCTCGGAATACAGCGCAGCAGAAATGACGGCTGCTGGCGCAAGTTTGGTGCGTTTTGATGTGAAAAGGATTGCAGAATGAAACAGAAAATTTTGGTTGCTGTAACAGGCATGACACCGCAAATTG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTGCCCCATTCATCGGGGATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 50413-49485 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNF01000010.1 Alysiella filiformis DSM 16848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50412 28 100.0 31 ............................ CTCGCCCCACCCAAACGCAAAGACTGAATGA 50353 28 100.0 32 ............................ TGCGTTGTATGCGCCTGCAACCCAATCAAAAT 50293 28 100.0 32 ............................ TTAGCATAGCGATGCTCACCAAAACCATCAAA 50233 28 100.0 32 ............................ GTCGCCTGACAATAATTTACCATTACCGAAAG 50173 28 100.0 32 ............................ TCTTGTTTTTCAAAGGCACTTGCCCAAATTCG 50113 28 100.0 31 ............................ TGATGATTTGACTTTCTCATTCAATTCATTT 50054 28 100.0 32 ............................ GATTGAAGAAGGCAGTTACATCGTTATTGACA 49994 28 100.0 32 ............................ AAACCGTCCAAATACGTTGCGCCCAAACGGGT 49934 28 100.0 32 ............................ TTTTTGGTCAAAACGTGGGGCTTGGGGGGTAT 49874 28 100.0 33 ............................ TGCTTGCATGATTTTTTTCCTTTCAGGCAGCCT 49813 28 100.0 32 ............................ TTTTTGGTCAAAACGTGGGGCTTGGGGGGTAT 49753 28 100.0 33 ............................ TGCTTGCATGATTTTTTTCCTTTCAGGCAGCCT 49692 28 100.0 32 ............................ TCCGCCAGCGCATATTTGTCCAATTCAGGATA 49632 28 100.0 32 ............................ AATTTTTGTGTTTGGGCGATAAGGCGTGCACG 49572 28 100.0 32 ............................ AAGCCCCGAAGTTCAGGGATTTCTGCGATTAC 49512 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : ACAGCCAAGCGATTACCTTGAAATTGAAACAAAATTTGCCCATTAGCGAGATTGAGCAAATCATCGCCAGCGCCAATGCGTGGACAAAAGTCGTGCCGAACACCAAAGAAGCCAGCATTCACGAATTGACCCCTGCTGCGGTTACGGGCACTTTGACCACACCAGTGGGTCGCATTCGCAAATTGGCGATGGGCGATGAGTTCATCAGCGCGTTTACGGTGGGCGACCAGTTGCTGTGGGGCGCGGCAGAGCCGTTGCGCCGTGTGTTGCGGATTATTTTGGGCAATTTGGATTGATTTTATTGATTTGAAATTGAGCCAAAAATGGGTTCAGGCAGCCTGAAACGTGATTTTGGGATATGGCGAGACCCAATGTTTGAGTGCAATTTTAAAAATCCAATAAAATCAAAATATTAAAAACAATGGCAAAAACATGGGTTTTGCCAGCCCAAAGTAAAGCCAAGGCTTGATAACTGGGGCATTGCTGCTTATAATGCCCTA # Right flank : GTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 15635-14887 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNF01000016.1 Alysiella filiformis DSM 16848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15634 28 100.0 32 ............................ GCCATTGCTGAAAAAGATGGCAAAGTATTAAC 15574 28 100.0 32 ............................ TATTTTGTGGATTATGAAACCGCCATTGCTGA 15514 28 100.0 32 ............................ GACAAGAAGCCATTGCTTTACACATCAAACAA 15454 28 100.0 32 ............................ AAAAGACGCGAATATTCAAAGGTTTAACCAAT 15394 28 100.0 32 ............................ ACATCAAGAAAATCAAAACCAACAAAGCCACT 15334 28 100.0 32 ............................ AACTCCCCCAAAGAATTTGGCGTAGGCACGAT 15274 28 100.0 32 ............................ GTTGCAAAAATTTGAACCAATTTCAGGCTGCC 15214 28 100.0 32 ............................ GCATCAAAGTCACTTGCGGCTTTTGCGTTGCC 15154 28 100.0 32 ............................ TGAAACCATTGCGCCTGAAAATGTTAAAGGGC 15094 28 100.0 32 ............................ ATATTGAAAAACCTTTTAAATGTATTGTTTAG 15034 28 100.0 32 ............................ TTTCTTTATCATATTCGGAACAAATAAAGCCA 14974 28 100.0 32 ............................ CACAGGCGGACGGCTATTTAGACGGTTTGGAA 14914 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCCCGACCGCATAGGTCGCTTAGAAA # Left flank : AAAAAGGGGCGTGCCACCGCCCCCACAAAATCCCACCATCACGCCTGCACTTGCCAGAAGTCGCATTGCCGCTTGGGTAATGGAAGTACCTGTACCAAGCAAAATACAAGTGGTATTGGCAATGGGAATATTGTAATAAAGATTTTCGTTTTTGCCTTCGGTTAAATACAAAACCCGACCGTCTTTTTGCATCACTCGGCAATGCTCCAAATAAAACAGATTGGCTCGTTTGGAATGCAAAATGGCTTTGAGTTCGGTGGGTTTGAGGGTATTCATCGTGAAAACCAAAAAATGTTAAAGATTGTTAAATTTAATCATGGGTAATGATGGCTGTCAAGGCAGTAAATGGAAAAATGAGTGATGTTGAACCCTTTATTTTGAGATAAAATTAAATTTATTTAAAATCAATTAGTTAAGAATAGGCGGAAAAACATTGGTTCACAACACCAAAATGCCGTGAAACACTTGATATGGCTGTATTGAGCCATTATAATTGCCTA # Right flank : TAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 12086-11840 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNF01000012.1 Alysiella filiformis DSM 16848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 12085 36 94.4 34 ....T...T........................... GCCATAGCAGGGGTGAATGTGCGGAACGTAGAAC 12015 36 100.0 34 .................................... TGTGTGAATTTGGTACGTAATTCTTTTGTGGATT 11945 36 100.0 34 .................................... CGTCATCTTTTGTAATCATACTTAACATTTTTGT 11875 36 91.7 0 ..............................A..AT. | ========== ====== ====== ====== ==================================== ================================== ================== 4 36 96.5 34 GTCGGAATAATTGCCCCATTCATCGGGGATTAAGAC # Left flank : GGTGCTGGCGATGATTGCGATTTTAACGGGTGTGGATTGGGGTTGGTGGCTGCACCTTGTGGTTTGGCTGGCGTGGTTTTTCACATTGGGCAAAAAACACATGGATTTTGTGGACAATGCCATAGGCAATGATTACAACCGCCAATCGTGGCAAAAAACCCTGATTTGGGTGGCGGTGGCTTTGGTGGCGTATGTGTTGTTGATTATGTTGTTGATGTATTTGGCGATTCAATTAGATTGGGCGCACCCAAGTTGGTTTGCATAAAGGCGATTCAGGCAGCCAGATTGGGCAAATGAGCGCAAGGCTGCCTGCAAAAACTTGCCAAATGATGTAAAGAAGTGTAATATCCGCACTTCAATTATTCCGACTGAAAAGTTGGATTCCGATTGCATTTGGTGTTAAGAATTTGTTAAAAAGTATATTCGTTTGTGAAGATTTTTGGCTTAAAAATTTTGGCTTGCAATGTATTGATTTTACGAAAGAAAAACACAAGGGTGCT # Right flank : AAAAAAAGCAGCCTGAAAACATCAACAATGCGTTTTCAGGCTGCTTTTGCCATGTTTACAATGGCAGCAAAAAACCAAATACCAACCCAGTAACCGCGCCACACAATCCATTTGCTGAATATTCAATGCGTTTTGGTGTGTGGCTGTCTGAAACCTTTGCAAAACGCGGTTTGTAGGGGCAGATTTCATATCTGTCCCGTTTAGGTTCGCAGAAATTTTCATTCTTATCAATAAATTGAAAAAAGGGCGGATATGAAATCCGCCCCTACGTCAGTTTAAAAGTAGGTTTTGCAAAGGTTTCTGTCTATGTTGTGGGGTGCTGCAAAGCCACTTGAAATGCGCTTTACCGTGAAATCAAGCAAAAGCGTGTAAATCCCCCTGCCAGCACCCTTGAAAAATGGCTATGATGTGCGCCGTTTTGCCATTTTTGTGTGGCGAGCAATCTTTTTTCAATCTATTTTTGAAAGTTTGAAACATCATGAAAAAGTATTTTGCCGAAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATTGCCCCATTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //