Array 1 212922-211814 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFX01000003.1 Pseudomonas aeruginosa isolate 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 212921 28 100.0 32 ............................ GTACCGCTCAGCGGCGAACCGATAGGCACCGG 212861 28 100.0 32 ............................ GACTTCTGGCTGTTTTCCATGCGCACCAGCGG 212801 28 100.0 32 ............................ TTCCAGGCCAGTTCCACCACCGGTACCACCGC 212741 28 100.0 32 ............................ CGTTCCAGGCGTGCCGCCACCACCATCGCCAC 212681 28 100.0 32 ............................ TCGATCAGCGCCGCAGGAAGCCCAGGACCACC 212621 28 100.0 32 ............................ AATTTCGAACAGCCGACTGATGCCATCATGGC 212561 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 212501 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 212441 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 212381 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 212321 28 100.0 32 ............................ TGTTCCGCCAAGCGCTACCGGCACCGTGTCGC 212261 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 212201 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 212141 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 212081 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 212021 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 211961 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 211901 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 211841 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 691-2460 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFX01000085.1 Pseudomonas aeruginosa isolate 40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 691 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 751 28 100.0 32 ............................ CGGAAAACTCGCCGGCCAGCGTGTTCTTCAGG 811 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 871 28 100.0 32 ............................ TTGATAGGCTCGTACTCAGGCCCGGAAAACTC 931 28 100.0 32 ............................ AAGGCCCTGGCCTATATCGCGGGCGGCCTGAC 991 28 100.0 32 ............................ AGTCGCTCCGCTGGGACCTGGAACAGGACATT 1051 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 1111 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 1171 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 1231 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 1291 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 1351 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 1411 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 1471 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 1531 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 1591 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1651 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 1712 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 1772 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 1832 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 1892 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 1952 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 2012 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 2072 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 2132 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 2193 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 2253 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 2313 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 2373 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 2433 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12259-11335 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRFX01000085.1 Pseudomonas aeruginosa isolate 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12258 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGACGTGTGT 12198 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 12138 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 12078 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 12018 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 11958 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 11898 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11842 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11782 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 11722 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 11662 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 11602 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 11542 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11482 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 11422 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 11362 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //