Array 1 12875-9061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZJU01000157.1 Kocuria salsicia strain G1 isolate Kocuria salsicia, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 12874 28 100.0 33 ............................ GTAGGAGTCCACGGCGTCCAGTGCCGCCCCCAC 12813 28 100.0 33 ............................ CTGTTGGAGCCGGTGACGTTTGGGTGCACGGTG 12752 28 100.0 34 ............................ GCGGGGGCGTGGGGCCTTGAGGATGGGGGTAGGC 12690 28 100.0 33 ............................ GCCGCACCCGGCGCGACCCTATCCACCGTGGAG 12629 28 100.0 33 ............................ CTCCTCGCGTCCGACGATGAGCTTCGTTTCGTT 12568 28 100.0 33 ............................ GTCGCCACGGCCGGCGTACAGGTCGTCGAGCTT 12507 28 100.0 33 ............................ CATGGCCTCGCTCATGCCGAGGGGGATGGACGA 12446 28 100.0 33 ............................ CGCACAGTTCCAGGACGGCCGCCAGACCACCAA 12385 28 100.0 33 ............................ CCCGTTGGGCCATGAACCGTTGAGCGTGATGGT 12324 28 100.0 33 ............................ GTAGACCGAGCACTCGGAGTCCCCGATCCCACC 12263 28 100.0 33 ............................ GGCCATGTTCGTCTCGATGTAACGGCGCTCGAA 12202 28 96.4 33 .............T.............. TCCCGAAGCCGGTAGCCATGGGAGGCCTCCTAA 12141 28 100.0 32 ............................ CGCCTGCACATCCTGGACCGTGCAGTCGGCAA 12081 28 100.0 33 ............................ CCTGGGTGACCATGTCGTCCAGATCAGTTTTGA 12020 28 100.0 33 ............................ CCACCACCAATACCCCATAGGAGGGGCCATGAA 11959 28 100.0 35 ............................ GCAACCTGGGATACCGCAGATAAGCCACTGGCGGC 11896 28 100.0 33 ............................ CCGCGACCCCCGCTTCGTGACCGGGTTCGACGG 11835 28 100.0 33 ............................ GTCCACGTGATCGACGCGACCTACACCACCATC 11774 28 100.0 33 ............................ CACCCATCTGACTAGGCGCTTCGTGGTGCCCCA 11713 28 100.0 33 ............................ GGCAGTCGAGGGGTCTTCGGAGTTCAGGCCGAT 11652 28 100.0 33 ............................ CCCGACCCGTGGTGGTTCCCCCCTCGACATCCT 11591 28 100.0 33 ............................ CCTACGCACGCAACACCCCTGCACTGCCCAAGC 11530 28 100.0 33 ............................ GTGTTGCACAGCGGGGTCGTTTCTGCCAGGGGT 11469 28 100.0 33 ............................ CCAGCCCACGTTGTTGTACGCGTAGATGATCGC 11408 28 100.0 33 ............................ GGTTCGGGTGCAGTCCTGGGAGGAGGCGTTGCG 11347 28 100.0 33 ............................ GAGGCCACGGGCAACGGGAACGGGATGGGCGAG 11286 28 100.0 34 ............................ GGACCTCACCACGCTGCAGGGCACGGTGGGGGAT 11224 28 100.0 33 ............................ GGAGTACCGCACCGGCGACCTGTACTCGTCCAT 11163 28 100.0 33 ............................ GTGGGACTTCCATCGCGGGGCAGTTGTCATAGT 11102 28 100.0 33 ............................ TGTCCGTGTCCGCGGAGACCTCCGTAGGTGCCT 11041 28 100.0 33 ............................ GCCGTACCTCGATGCGGGGGCGGTCGCGTTCCT 10980 28 100.0 33 ............................ GTCCGCCGCCACCCGCTTCGTGACGTTGGCGGG 10919 28 100.0 33 ............................ GGACATTGAGCGGGAGGGTATGGCCGCGACCGG 10858 28 100.0 33 ............................ GTGAGTGGGCATGAAAAAACGCCCCCGCACCTA 10797 28 100.0 33 ............................ CTGAGACGCGTCCTCCAACTGGGTGGCCGCGAA 10736 28 100.0 33 ............................ GTCCGGCGGTCCGGCCGGGTAGTCGCGGAACCG 10675 28 100.0 33 ............................ GCGGACGCACCCACAGGGCTGACCACAGCCTGG 10614 28 100.0 33 ............................ CTCGTAGTGCTGGCCAAACTGTGCGGAGTCCAC 10553 28 100.0 33 ............................ CGCCTCACCGCCCTGCGAGATGGAGGACAGAAA 10492 28 100.0 33 ............................ GCGGTCGTCGATCGCTTTAGACCCGCCAGCGGT 10431 28 100.0 33 ............................ GTCCGCGTTCAACAGGACGAAGGACGGCATCAA 10370 28 100.0 33 ............................ CTCGTGTTGCAGCTGCGTGACCCGGAGTCCGTG 10309 28 100.0 33 ............................ CGAGTACCGCAAAGTTCAGGAGGAAGCCAACAT 10248 28 100.0 33 ............................ CCCGAACCCGTTTGCCCGGGTCGAAAAGGCCCC 10187 28 100.0 33 ............................ CTGCTCGGCCTCGTCGTTCAGGGTCCGGTCGGC 10126 28 100.0 33 ............................ GTGCATCGAGGTGCCAATCGCGGTCGAGGAGTG 10065 28 100.0 33 ............................ TGCGAACGGCATCCTTGATCTGATCGACCTTGA 10004 28 100.0 33 ............................ CGGGTAGCTACACCACGAGTCATTTACGGTCAT 9943 28 100.0 33 ............................ GCCGACGGCATGATCTTCAACGCCTACCACGCC 9882 28 100.0 33 ............................ TGGAGGTGGTCACCCTCGACGTGGAGTGCATGG 9821 28 100.0 33 ............................ CCGAGCTACGCGCCGCGTGGCGGGTGTTCGCCG 9760 28 100.0 33 ............................ TTGGAGCACCTGCGGCTGTTGTGGGGTGCCACC 9699 28 100.0 33 ............................ CCAGGTGTCGTCACGCTTCGGGTCGTAACCCCG 9638 28 100.0 33 ............................ GCTGGACACGTCCCTGCCTGCGCGGGCGACGTG 9577 28 100.0 33 ............................ TCCACGCGAACCCCTCCTTGCCCCAGTCGCCGG 9516 28 100.0 33 ............................ CCTCATCTCATCCGAGAAGAACGGGGCCGGTGC 9455 28 100.0 33 ............................ CTGTTCCCCGTTACGGGCCACCACCGGCAGCAC 9394 28 100.0 33 ............................ CGTCACCGGCGAGCTGTCCACGGCGATCGTGAA 9333 28 96.4 33 ..........T................. CCCGGGGCGCATGGCCTCCCGTTACAACTCTGC 9272 28 100.0 33 ............................ GGGATCGTGCAGCAGTACCAGTTGGAGTACAAC 9211 28 100.0 33 ............................ CGCGCACGCGAGGCAACGCCAGCAACAACAACC 9150 28 100.0 33 ............................ GAGGTGGCAGTAGGACAGGCGGACCTTGCCGGT 9089 28 96.4 0 .....................G...... | G [9067] ========== ====== ====== ====== ============================ =================================== ================== 63 28 99.8 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CGACGACTCCATGTCGCTCTGGTCTGGCCGGAGTGAAGGCCGTGTGCCGACGGGGAAGAACTTCTTTCGGGAGGACTCGTGATCGTCTTGGTCCTCTCGGCCTGCCCTGTGGGCCTCCGTGGGGACCTGACGAAGTGGCTGTACGAGGTTTCCGCCGGGGTATTCGTTGGCAAGGTCAGTGCACGGATTCGGGAGCACCTGTGGGAGCGGGTGCTGGAGTCATCCGGCTCAGGGCGGGCCATCCTCGTGTGGAATGCCAGGGGCGAGCAGGGCTTGAAGTTTTGCGTCAAGGACCACCACTGGGAACCGGTGGATCTCGATGGGCTGACCTTGATGAAACGGCCCTCGCGCAGCAAACCCCGGTCAGCTCCCGAGCTCAAGCCTGGGTGGAGCAAAGCCGGCGCCCGTCGCAGGTTCGGTGGCAGGAAACCTTGATCGCAAAAGTGTCGAAGTCGAAGGAAAAACAGCCTTCGGGGGAGAATAACTCCTAGTCACCAAGT # Right flank : TCTTCATCCGCGCATGGGTTAGCCAGAAGGACAGCTGCTCCACCTCTACCCGAACCTCCGTCAGCGGCGGCGCAGAGCACCGGTCGCCAGGTGGTTGGGGCTCAATGAGTCCGTGATGTCGTCCTGGCTGAAAACATATGTTCGAGTGCTGAATGTCTGTGCTCACCACGGTCGTCTCTGAAATGTTGGCCTGGGAGTGCACCCCGCCATTCCCGCCGGCCGTTCCACAGCCTGGCTGGACGAAAGAAGCGTCCTGGAGGAGGACGCGCATCGGCGGAAGCGTCTCTACCCGGTCCTAGCGTCTCTGTATCCGTTCTCGACACGGTGTCTCCTCGAAGCAGCTGGGTGTAATGACTGATCGAACGTCTGGACCAGACGCCGGCCGTTGCGCTGAGGCCCAGGGGAATGTTCGAGGGCTGGGCGGATGATGCTTTCTGGCGTGACTACCTCCCACAACAGATGTCCTGAAGTTTCGACCGCATGATCGGCGCCGCAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //