Array 1 46160-46638 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJF01000014.1 Bacillus safensis isolate Bacillus pumilus NRS576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 46160 32 100.0 33 ................................ ACTTCGTTAGCCATTCGTATTCCTCCAATGTAC 46225 32 100.0 34 ................................ CTTAAAAATCATTATGATCATGCATCCTTTAAAG 46291 32 100.0 35 ................................ CTTCTCGTTATTGACCGCATCGAATCGGTCTTTAG 46358 32 100.0 37 ................................ GCGATCATCAAGAAGTTTTATGCAGACGGAGACTGGA 46427 32 100.0 35 ................................ ACAACAAAGGAAAGTTTGTCATTCATTTTATTTGC 46494 32 100.0 33 ................................ GCCTGTTTAATGACTTCAGCGCCGGATATTTTT 46559 32 75.0 15 ...........T.......T.....CCATGC. CAGGTGCTTCTATGT T [46582] Deletion [46607] 46607 32 84.4 0 ........T..........TA........GG. | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 94.9 32 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAAGCTGATGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTGAAAATGTATATTTTATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATATTTTTAAATGAATTCAAACCTGTTGATGAAATCATGAAAATACCTTTAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTAAGGTGGACACAAAATCCCCGGGACATTCACACCTTCTCATTCGACAAAAATGATAAAAAATGTATATTGTTTAGAGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTACAATAAGGTCGGAAATCGCAGTCGCATTCTATATGAGTGCGAGGATTGAAATATGAATTTATCATCAAAGCTGCCAGACCTTACTGCTGTCGTACTCTACATGAGTGCGTGGATTGAAATTACCCATCTTTTCAACATGGAATACTGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATTCCC # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 47592-47886 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJF01000014.1 Bacillus safensis isolate Bacillus pumilus NRS576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 47592 32 96.9 34 ............G................... TCTTCTTTTCCAAGCGACTGTTGCAAGACCTTTA 47658 32 93.8 33 ............G..................A TTTGTAATAACCGTCACCGCGACACCAGCCATA 47723 32 100.0 34 ................................ TTCGCTGCTCGTATATCCTTTTGTTGTTAATGTT 47789 32 96.9 34 ......................A......... CATTTGCCGCTCACCTTCTTTTGAAGCGTGAAAC 47855 32 84.4 0 ...........C...........AT..T...A | ========== ====== ====== ====== ================================ ================================== ================== 5 32 94.4 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATTCCCCTAGCTGAGCAATTTGGTGATTGTCAATGAGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTGTGGTGTTGGGTATTTTTTGTAGTGTTCTTCGGTCGCACTCTACATGAGTGCTTAGCCATTCTTGATTTTAAGTAAGAGAAAACATAGTTAAAGTTAAAGCATGTATGTTTGATCGGAAATTATTAGTGGAGTAACTATACTGATTAAAATTTACTTTTCCTCAAAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAGAGTCAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTTCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : AGATTGTGTCTTAAACGGGTATGACATTCTCAGAGATTATGTTCTTACAACATCACTTTAAGATACAAAATCCATCAAAATATACCGTTCATTTGTAAAGTGAAAACATGACTCATTGCAGTCATGTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTATATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAGACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGAGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGA # Questionable array : NO Score: 6.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 55517-55947 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJF01000014.1 Bacillus safensis isolate Bacillus pumilus NRS576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 55517 32 93.8 36 .AA............................. TCTCAAAGCAAAGGCCAGTCTATAATATGCTTTATT 55585 32 100.0 38 ................................ TTCATCAGACACAGCTTCCTGCACTTCGCATCCTACGT 55655 32 96.9 33 .....................A.......... AGACCCGTTGCATTCGTGATGTACTCTTTTGCT 55720 32 100.0 35 ................................ GTATCGTTCCAGCCAGTATCCTATCGAAAGTAAGG 55787 32 100.0 33 ................................ GGGTCTAATATACGAACGTCCGCACCAGAAGCA 55852 32 93.8 32 ........................G..T.... TAGCCGACGGTTCAGCTTGATGTTTTTTTAAA 55916 32 84.4 0 A..................T.A...A.A.... | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 95.6 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGATGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTGAGTGTGAAAACAAAATTTTATATAGAAACTTAAGGATTTTGACGATCATTCTCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTGTCAGAATGTAGCTTGAAAGATATATGGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGTTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTGAAATGTACAATCCGAGGTCGTAACCTGAACTAATGTCGCACTCTACATGAGTGCGTGGATTGAAATGTATTGTACGAGATCATCAACTAACATAGATAAGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 56292-56654 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJF01000014.1 Bacillus safensis isolate Bacillus pumilus NRS576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 56292 32 100.0 36 ................................ TGAAATGTACAATCCGAGGTCGTAACCTGAACTAAT 56360 32 100.0 33 ................................ GTATTGTACGAGATCATCAACTAACATAGATAA 56425 32 100.0 36 ................................ AAATAGGTAGCTGTCACTCTCTTTTAGAGCGGTTAA 56493 32 93.8 33 ....T......T.................... AATTCTGTTTGAATAATCAATTCTTGTTTAGTT 56558 32 93.8 32 ..T.....T....................... ATTGATTCTCTATGTTCTGGTATTTCAATGGC 56622 32 90.6 0 ...................T..A....A.... | T [56651] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTCTATATGAGTGCGTGGATTGAAATGGGTCTAATATACGAACGTCCGCACCAGAAGCAGTCGCACTCTATATGAGTGCGTGGGTTTAAATTAGCCGACGGTTCAGCTTGATGTTTTTTTAAAATCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAATGTAGCTTGAAAGATATATGGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGTTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAAACATAACTCTGCCTCTTAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAAAAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAGCATTCGCACCGTTTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAGGGGAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGCGTGCGTGGATTGAAATTACAAACATAATAGCCAATTGTTCTAGATACTGGTCGCACTTTACATGCGTGCGTGGATTGAAATCCCCTTTATTTTCTGCGCATTGCCCCGCCTTTGGCGTCGCACTCTATATGAGTGCGTGGATTGAAATATCCATATCGACCATGATGGTAGGAACATCAACAAGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 56933-57230 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJF01000014.1 Bacillus safensis isolate Bacillus pumilus NRS576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 56933 32 96.9 33 ...............C................ TACAAACATAATAGCCAATTGTTCTAGATACTG 56998 32 93.8 35 ........T......C................ CCCCTTTATTTTCTGCGCATTGCCCCGCCTTTGGC 57065 32 96.9 35 ...........T.................... ATCCATATCGACCATGATGGTAGGAACATCAACAA 57132 32 100.0 35 ................................ CATGCTTTTTGCGTTCTCTTCTGTTAATCTTAAAC 57199 32 81.2 0 ....................A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.8 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTACATGAGTGCGTGGATTGAAATAAATAGGTAGCTGTCACTCTCTTTTAGAGCGGTTAAGTCGTACTCTATATGAGTGCGTGGATTGAAATAATTCTGTTTGAATAATCAATTCTTGTTTAGTTGTTGCACTTTACATGAGTGCGTGGATTGAAATATTGATTCTCTATGTTCTGGTATTTCAATGGCGTCGCACTCTACATGAGTGTGTAGATTAATAATTGCGAAAAACATAACTCTGCCTCTTAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAAAAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAGCATTCGCACCGTTTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAGGGGAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTTATCAGTTCAAAATCTAAACAAATGAATAATCCAAGCCCTTCACAACAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTCTCAGGGACCGGCACACGGTTAAACGTGTCTAAAATGACGACCTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATCTCTTCAATTTCATC # Questionable array : NO Score: 6.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //