Array 1 17031-16776 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXF01000052.1 Ruminobacter amylophilus strain DSM 1361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 17030 37 100.0 35 ..................................... TACGTTTGATTGAATTTAATTTTTCAAGCGTTGAA 16958 37 100.0 37 ..................................... TATCATTGGATATCATTGGATATCATTGGATAAGACT 16884 37 100.0 35 ..................................... AATAACAGTAAAGAAACACAGCACGGCAGACAGCA 16812 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTTTCAGTTATATGTAGATACAGCTTATAATTGATAC # Left flank : | # Right flank : TCTACTTAGGAATCGTTAAAAATCAGTACCTAAGTAGAGAAAAATATTCTTAATTTTTCTCATAATTCAATTATGCATAAAAAAAGTTGATTTATGAGAAAAAAGTAATATACTATAAAAAGTATCTACATATGAAGTCGTCTTTATGGCGAGCTGAAATCACCAAAAGTTAAGATATAGACCAAGCAACTGTAATTTACATCTTGGTATCTTCAGTATCTGTCAGCGCAAAAGTTAAAAAACTCGCACTGACAACATTTTTTTGCCTCGGCTGTAGAGTCGGGGAGAATTTCTGTGTCAATAATTTTTTTAATTTTGCCTACCACTTCAATTGTTTTAATCCTAAGCTTTTCATCAATACATATTTCATATGTCTGACCTTTACGTCCATATAATATAAACCCCCTATTAATAGAAATATTATATTTTTCCTCACAACACATTACATAAGCACACAGTTGTATTTTGACACCGGCAGAACACATTAAATGTTCATTACT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTATATGTAGATACAGCTTATAATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1203-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXF01000068.1 Ruminobacter amylophilus strain DSM 1361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1202 28 100.0 32 ............................ TTGAAGCAACACAATGGGTTTTCCATTTTGAA 1142 28 100.0 32 ............................ TCATAGTTTAAGGCGGTACTTTGATTTAGCAC 1082 28 100.0 32 ............................ GATAAGAATATCATCAGTGATACCAAACGAGG 1022 28 100.0 32 ............................ AAAAAGAGGGAAAGAACTATGATACAGTTAGA 962 28 100.0 32 ............................ TGTACTTTTGCTTTTGGTAATTCCTTGAGTTT 902 28 100.0 32 ............................ TCATCCAGATTTCAGACTGGTGGTAACGGCCA 842 28 100.0 32 ............................ TGAAAGCTATCGCACTTGTCGGCAAGGGTCTT 782 28 100.0 32 ............................ GCTTGCGTGTTCGGTGATGTCTATGACGCTGT 722 28 100.0 33 ............................ TGGGAACCAGCTATAATTGAGTGAAGGCATATT 661 28 100.0 33 ............................ TTCTTCTTGGTTGGTCTGGATCTTCATCTATAA 600 28 100.0 32 ............................ TGATGAGTGTTTACGCCTATCGGGCCCGAAAA 540 28 100.0 32 ............................ ATAGAGAACGTCAATAAAGCCGTACTGAGTAC 480 28 100.0 32 ............................ TTTTAACGAAAACGGCTATGGCATCTTTGCAA 420 28 100.0 32 ............................ TGATGAGTGTTTACGCCTATCGGGCCCGAAAA 360 28 100.0 32 ............................ ATAGAGAACGTCAATAAAGCCGTACTGAGTAC 300 28 100.0 32 ............................ TTTTAACGAAAACGGCTATGGCATCTTTGCAA 240 28 100.0 32 ............................ TGTGATAGTAACATCGGAGCCATTGAGGGAGA 180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTAACTGCCGTATAGGTAGCTTAGAAA # Left flank : TCTCTATGGAAGTGTTGCTCTAGTCCCCAAATTTGTAAATGAATTTGTTCAGTATCGTCGGGTTCAGTGTAAGTTTAATAAGGAGAAATTGATTCGACGATATGCACAGCGACATAACGAAGATTTGAATTTTGTAAGAATTCGTTATAAAGATTTGCAAAGTAAGAATCTATCCCTACCTTATGTTAATTTAAGTAGCTCAACTAGTGGAGAACATTTTAGGTTATACATAGATCAGATTGAAAATATGGAATATATTCCTCCTGTTTTTAATAGTTATGGATTGATATCTAGTGGTGCTTTACCAAAATTTTAATTTCTAGTTTGTGGGTCCTTATACAATATGGGGCCCTTTTCTTTTTTAGTTTGATATTAATTTTTATATTGTTTCGTATGCTCTGAAATATCATTGCATACGAAATTTAATATTATTTTTTATTTTTTTCTAAATTTATTCATATAGTATAATAGAATCAATGATATCGGAAATCCAATTCATT # Right flank : ATCATCAACTGCCTGCCTGTTAAACGATCGTAAAAGTTGACCACCTAAACGAATTAAAGTTGACCACCTGCAAACAAGAAAAAACAGACAACGGAGTGGTCATGAAAAAAGCCAAAAATCGTAAAATGCCGGAATATCTCGTAAGGAAAAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //