Array 1 3574960-3574322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063518.1 Escherichia coli strain EH01-18-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3574959 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 3574898 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 3574837 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 3574776 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 3574715 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 3574654 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 3574594 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 3574533 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 3574472 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 3574411 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 3574350 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3601969-3600659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063518.1 Escherichia coli strain EH01-18-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3601968 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 3601907 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 3601846 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 3601785 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3601724 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3601663 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 3601602 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 3601541 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 3601480 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3601419 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3601358 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3601297 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 3601236 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3601175 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3601114 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 3601053 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 3600992 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 3600931 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3600870 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3600809 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3600748 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3600687 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //