Array 1 2354288-2353466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009460.1 Dickeya fangzhongdai strain ND14b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2354287 29 100.0 32 ............................. GGCTTGCACCCCGGTTACGGGGAGTATTGTTC 2354226 29 100.0 32 ............................. GGAATGCTCGCTGGCACACGGTCGAGAAAGGG 2354165 29 100.0 32 ............................. CACAACGCAGATCGCAACGATGGCCGCTATCC 2354104 29 100.0 32 ............................. GACGAGGAAACCAACCAGTACCGGCGCTCAGT 2354043 29 100.0 32 ............................. TCTGCTACATGGACTCCGACTGGTATGACATC 2353982 29 100.0 32 ............................. GAGGTCTATGACGACCGCACTGGAACGAACCG 2353921 29 93.1 32 ............CC............... CAACGCCTTGGATGGTTGAGCATACTTTTCAT 2353860 29 100.0 32 ............................. TCTTCCGACTCCTGAGCAATTTCGTGACCTGT 2353799 29 93.1 32 ............CC............... TGCAAAACGTCCGTTGTCCAGTTTTTGCGCCA 2353738 29 93.1 32 ............CC............... CCGGAGGAGAAACTATACAAGGTTTCGGACCG 2353677 29 93.1 32 ............CC............... ATGTCCTGCGCCAGAGTGTCGGCATCCCATGC 2353616 29 93.1 32 ............CC............... CAGCTTATATCGACGCTGGGATATTCGGGGAC 2353555 29 93.1 32 ............CC............... GACGCTGTCACGGATGCATCCAGATTAGCCAC 2353494 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATCCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGGGTCTATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACTAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTATCGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TTTATGTCGATAGCCTGATTGGCGGCGGCCGGTCACGGAAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTTGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3728068-3726599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009460.1 Dickeya fangzhongdai strain ND14b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3728067 28 100.0 32 ............................ GTGTCACCTTTGCCCGGATACCATTCATTCTC 3728007 28 100.0 32 ............................ GGGTGATACACGGTCAGTGTGGTCTTTTTCTT 3727947 28 100.0 32 ............................ GTTCCGCCAGAAAAAGAATGGGATACGGTTGA 3727887 28 100.0 32 ............................ CGGTGCCGATGCGGCACATACAGCGGCTCAGA 3727827 28 100.0 32 ............................ GCAATTTCATCGACACTTGGTTCGCGTCTGCC 3727767 28 100.0 32 ............................ AGCTAATGTTGCGAGAGCTGTGCTCATTATTG 3727707 28 100.0 32 ............................ CAGCGGCGGGCGATCTCGTCATTGCTGTATGG 3727647 28 100.0 32 ............................ AGGCAGATACCGCCTTTGCCATGTCGCGCAGG 3727587 28 100.0 32 ............................ TCCATTTCCATTAAATTCACGCAATGATGCGT 3727527 28 100.0 32 ............................ GCCGGTAGACGTCCCCGGCGCCGAGCCGGCAC 3727467 28 100.0 32 ............................ GTAGGCGTAGAGAATGGAAAATTCGACATCGC 3727407 28 100.0 32 ............................ ACCATCTGCCACTGCCGGGGCAACAGAGGCAG 3727347 28 100.0 32 ............................ TGGCGCCACCCGGTTTTGTACCACATTTGCAT 3727287 28 100.0 32 ............................ GGTGCCAGTCGGCGCAAAAATCCTGATACGCC 3727227 28 100.0 32 ............................ AGTGAGGCCAGTAAACTTGCCTCGGTAAATAA 3727167 28 100.0 32 ............................ GGATGGCCCAGGCGGGGTTAAACGGCTGATTA 3727107 28 100.0 32 ............................ ATCCAGATGCGCCATGCGGATCACTTCCATCC 3727047 28 100.0 32 ............................ GAGCTTGTTGGCCGTGCGCTGGCAGTGAATGC 3726987 28 100.0 32 ............................ TCCTGCGCACGTCGTTTTGCACCCTGCCCGTT 3726927 28 100.0 32 ............................ TCATCCGGAACCGTGTAAGGCTGGCTTGCTGG 3726867 28 100.0 32 ............................ GCAAGTGCAAAATCTGCGGAGAAAAATTCACC 3726807 28 100.0 32 ............................ GTGATGAGCTGGAAGCAAAGTTGGAGAAGCTG 3726747 28 100.0 32 ............................ AGTGCCGACACGCTGAAAGTCAATGGCCGGGC 3726687 28 92.9 32 ...........GA............... AGCGGTTGTGGTCGAGTCGCCAGCCCCGCCAG 3726627 27 85.7 0 ....................A..-..CG | GG [3726604] ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.1 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATTCATTGAAAAATACGTAATACACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGGGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGTATTGAAAAATCAATAAGTTACCGAGGACCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGGGATACAACGGGTTAGAGTCAACGAGCTACG # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCCTTGTCGTGCGTGCGATGAAGTAGCAAAGAAACGACACCGCTAATCACGCACGAAACCCTTTTACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCACGTGGGATAGCGCCGCCGACCGGCGGACCGGCGACGGCACGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3736982-3737851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009460.1 Dickeya fangzhongdai strain ND14b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3736982 28 100.0 32 ............................ AATGACCTATACCGCCTTGAGTTTTCCCTAGC 3737042 28 100.0 32 ............................ TCATGCACGACCAGATTGAAAAATTTAGAATA 3737102 28 100.0 32 ............................ TATACAAGAAGAATTCAATGCAAGGGGATGCA 3737162 28 100.0 32 ............................ GTCTTCGCCGTGCTCATCCAACAGCACTTTGA 3737222 28 100.0 32 ............................ TGGTGAACCCACTCATAACAGGTGCTCATTGG 3737282 28 100.0 32 ............................ AATTCGGATTCTGCTGGGGACGCCATCATCAG 3737342 28 100.0 32 ............................ ATACGCCGCTTTCGTGCTGAACACCTCCACGT 3737402 28 100.0 32 ............................ GACTGACCGCGACACTGACCCCGCTGCGTGGC 3737462 28 100.0 32 ............................ TGTCGCTGCAATAGCCCCAGCACTACCACCGC 3737522 28 100.0 32 ............................ AGGCTAGCAAGAGGCGCCTGATGCCCACGGTC 3737582 28 92.9 33 ...........CA............... AACACCACCTCGATAAACGACAGGCGATGTTCT 3737643 28 92.9 32 ...........CA............... ACTCACGTTCAAACGCATCACGCAGGCGCTGC 3737703 28 96.4 32 ............A............... TATTGCCGCCGGGGTCGTCTGCGCTTGAGCGT 3737763 28 100.0 32 ............................ GTTTACCACCGCCCGTGCCAAAGGCCGCATCC 3737823 28 78.6 0 ...........CA........AG...GT | G [3737842] ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGTTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAGCGACTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGCCTCTCCAACGGACAAACGTTTTTACTGTTTGTCGAGCACGGTCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGATCTAACGTATTGATTTTAAATACTGAACTCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAACAATCAGGTTATAAGCGATAATTCGCTACA # Right flank : TGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGACGCGATTGTCTATCCCGCACGAAACCATCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAATACCCTGGCTGTTTGCCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTATCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3743130-3742626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009460.1 Dickeya fangzhongdai strain ND14b chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3743129 28 100.0 32 ............................ GTCATGTAGACCAGAGAACCAGCCGCCGTTGC 3743069 28 100.0 32 ............................ GCTCAATTAATGGAGCAGGCAGCAAAAGAGGT 3743009 28 100.0 32 ............................ GGGATGAAATCGCCCACACAACCAAATAACTC 3742949 28 100.0 32 ............................ GGCTTATGGCGGTTAGCCAGTGTTATGCGGTT 3742889 28 100.0 32 ............................ TCCTGATGCCCATCGCGTACAGTTATTGACAG 3742829 28 100.0 32 ............................ TATATGCGGTCGCAGAACATCGCCATGACTGA 3742769 28 100.0 32 ............................ CGGTCGATAAATACCACAAGTTTTCCCGCAGA 3742709 28 100.0 28 ............................ CGACCACTTGGCACGATTGCCGATTACA 3742653 27 75.0 0 ............C-.......A..TCCC | A [3742628] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCACCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCCCTTCCTCGCCCGCCGATTTTGACCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGGTGGTAACGGTCGGCTTTAAAAAAGGGTTTTCGGACAAAAAACATCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : GCTGATGCCGTTGCTCCGGCATCAGCGGATTCAGGTTTATTCTGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTCTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCATGTTAGTGAACGGGTAGCCCAGACTTTTAAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACACCGAGCGATACCAGCGGAATGCCACGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTACCCTGCTGCGCCAGCCCGAACAGCATACGGCTGTTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //