Array 1 3015488-3013950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ER3625 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3015487 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3015426 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3015365 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3015304 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3015243 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3015181 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3015120 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3015059 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3014998 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3014937 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3014876 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3014815 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3014754 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3014693 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3014632 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3014571 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3014510 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3014448 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3014345 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3014284 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3014223 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3014162 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3014101 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3014040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3013979 29 96.6 0 A............................ | A [3013952] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033601-3031620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ER3625 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3033600 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3033539 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3033478 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3033417 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3033356 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3033295 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3033234 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3033173 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3033112 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3033051 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3032990 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3032929 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3032868 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3032807 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3032746 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3032685 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3032624 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3032563 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3032502 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3032441 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3032380 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3032319 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3032258 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3032197 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3032135 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3032074 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3032013 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3031952 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3031891 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3031830 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3031769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3031708 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3031647 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //