Array 1 1920502-1918643 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086662.1 Escherichia coli strain E2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1920501 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 1920440 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 1920379 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 1920318 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 1920257 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 1920196 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 1920135 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 1920074 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 1920013 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 1919952 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 1919891 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 1919830 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 1919769 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 1919708 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 1919647 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 1919586 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 1919525 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 1919464 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 1919403 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 1919342 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 1919281 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 1919220 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 1919159 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 1919098 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 1919037 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 1918976 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 1918915 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1918854 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 1918793 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 1918732 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 1918671 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1949389-1948750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086662.1 Escherichia coli strain E2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1949388 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 1949327 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 1949266 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 1949205 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1949144 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 1949083 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1949022 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1948961 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1948900 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1948839 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1948778 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //