Array 1 221152-219411 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKF01000001.1 Salmonella sp. S112-43924 NODE_1_length_667808_cov_149.892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 221151 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 221090 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 221029 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 220968 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 220907 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 220846 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 220785 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 220724 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 220663 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 220602 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 220541 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 220480 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 220418 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 220356 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 220295 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 220234 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 220173 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 220112 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 220051 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 219990 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 219929 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 219868 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 219806 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 219745 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 219684 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 219623 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 219562 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 219501 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 219440 29 93.1 0 A..............A............. | A [219413] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238570-237322 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKF01000001.1 Salmonella sp. S112-43924 NODE_1_length_667808_cov_149.892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238569 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 238508 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 238447 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 238386 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 238325 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 238264 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 238203 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 238142 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 238081 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 238020 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 237959 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 237898 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 237837 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 237776 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 237715 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 237654 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 237593 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 237532 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 237471 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 237410 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 237349 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //