Array 1 348689-351368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJPA01000008.1 Listeria monocytogenes strain BCW_4259 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 348689 36 100.0 30 .................................... AAAATACCGGTCGGTTATGTTAGCGCTCTT 348755 36 100.0 30 .................................... TAAACCCGTTCTTACCGCCACCGCGACCAA 348821 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 348887 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 348953 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 349019 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 349085 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 349151 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 349217 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 349283 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 349350 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 349416 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 349482 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 349548 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 349614 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 349680 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 349746 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 349812 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 349878 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 349944 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 350010 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 350076 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 350142 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 350208 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 350274 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 350340 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 350406 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 350472 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 350538 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 350604 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 350670 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 350736 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 350802 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 350868 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 350934 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 351000 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 351066 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 351132 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 351198 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 351264 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 351330 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [351355,351361,351364] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //