Array 1 178868-177007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAG010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS3 YZU1947_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178867 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 178806 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 178744 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 178683 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 178622 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 178561 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 178500 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 178439 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 178378 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 178317 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 178256 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 178195 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 178134 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 178073 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 178012 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 177951 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 177890 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 177829 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 177768 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 177707 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 177646 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 177585 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 177524 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 177463 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 177402 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 177341 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 177280 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 177219 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 177158 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 177097 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 177036 29 93.1 0 A...........T................ | A [177009] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196329-195508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAG010000004.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS3 YZU1947_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196328 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 196267 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 196206 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 196145 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 196084 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 196023 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 195962 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 195901 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 195840 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 195779 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 195718 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 195657 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 195596 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 195535 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //