Array 1 1000290-993304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009502.1 Methanosarcina thermophila CHTI-55 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1000289 29 100.0 44 ............................. TGATACGATTTTTATAGTCTTATTTTGCACCTCAGAATTCGAGA 1000216 29 100.0 44 ............................. TCGTGAAATCTGAAAATACAAAATCAAGATTGCCACATTCGAGA 1000143 29 100.0 45 ............................. AAAACTGTAAATTTGCGAATGCGTTTTCTGATGCTGTATTCGAGA 1000069 29 100.0 46 ............................. GTTGATAGCCTCCCAATTATGACCCACGATTTTTCTGTATTCGAGA 999994 29 100.0 45 ............................. TTCGTCGGGTCTGCCGACGTTGTTCTTATGTAATATCATTCGAGA 999920 29 100.0 45 ............................. CACGCTGCAAAATGTTGATTTTTCCCAGTACTCCACAATTCGAGA 999846 29 100.0 45 ............................. CTACGGTGCGAGGCTTCGCTCTCATCCCCACCCTGAAATTCGAGA 999772 29 100.0 45 ............................. TGAGGTGAAATATTGGCATCAAAAGCAGAAAAAGAAAATTCGAGA 999698 29 100.0 44 ............................. TAATCATCCTCAGAAAGTTCCTCGCCTGATGATATCATTCGAGA 999625 29 100.0 45 ............................. TGGTAAGGGTTGAGCCCTCCCATCCCATATCTGCCTGATTCGAGA 999551 29 100.0 45 ............................. GAAAGCACCTGATATACAAACCCCTAATTAAACCTAAATTCGAGA 999477 29 100.0 43 ............................. CGAAATATAGAAGACAAAGTCGATAATCATTAAGGATTCGAGA 999405 29 100.0 45 ............................. ATCAATTGGGATAATCAATACTTTCCTATTTTTATTTATTCGAGA 999331 29 100.0 45 ............................. AACATTAAACGCAAATTATAAAGAAAAAATTCGTAATATTCGAGA 999257 29 100.0 45 ............................. ACTATGTTGATGATAACGAGCAAGGTACAATAAAGAGATTCGAGA 999183 29 100.0 42 ............................. AGGGCAGTTCCCATACTCTGAAACTTTTTTCCGAATTCGAGA 999112 29 100.0 44 ............................. AGGAGATCTTTCAAGGTTGTGAAGATCTCCTTCGTTATTCGAGA 999039 29 100.0 42 ............................. TTCTTGATTAAGATGCAACTTGAAGAGCTTAAAAATTCGAGA 998968 29 100.0 45 ............................. TTAAACAAAGATAGAACATCTGAGGTCATAGAAGCCGATTCGAGA 998894 29 100.0 44 ............................. CATTCATGACAATAAATTCGTGGATGCTGAAGAACTATTCGAGA 998821 29 100.0 45 ............................. CCACATCCTTTGAAATCTTACAGCGGTCTTTGTAGCCATTCGAGA 998747 29 100.0 44 ............................. CTCAAAAAAAGGATTTAAAACGCTATCAAAAGAAGAATTCGAGA 998674 29 100.0 44 ............................. CTATGACGTGAACGCCTTCGCCGCTTGGGGAGATTTATTCGAGA 998601 29 100.0 44 ............................. ATTCTCTCTGGTCACAAGATCCCCTATTATAACGCTATTCGAGA 998528 29 100.0 44 ............................. TAAGCTTCGTTGAACGTTTTCCGGTTGTTCTTCCAGATTCGAGA 998455 29 100.0 44 ............................. ACTGTCTAAAAATCAAAATAGAAACCTTTAAATTATATTCGAGA 998382 29 100.0 45 ............................. TATCATGGTATACTGGCTCGTCTGTGACTTCCATATTATTCGAGA 998308 29 100.0 45 ............................. TTACCAACAACGTCATAACCCAAACGGGTCCCGTGCCATTCGAGA 998234 29 100.0 43 ............................. AAGAGGAAGATCAGGTAAAACTCGTTTGTACCCACATTCGAGA 998162 29 100.0 47 ............................. GTAATTTAGTCTGTGACCAAACAACAACAAGCACAGCGCATTCGAGA 998086 29 100.0 43 ............................. TGAAATGTTGAGGAGGATCGCAGATATTTCGTGGCATTCGAGA 998014 29 100.0 45 ............................. AAGAAACTGTTTTAACTAAAAAGAGTGCTGGGAAGTTATTCGAGA 997940 29 100.0 44 ............................. TGCCGAGTACTGCGCATAGATCATTGACATACATTCATTCGAGA 997867 29 100.0 43 ............................. ATGAAAATGCTTCGCCTGAGCAGGGTTCCAGTGGGATTCGAGA 997795 29 100.0 43 ............................. CATTGAAGCTCGGGGTCCGGTGATATTTTTCATTCATTCGAGA 997723 29 100.0 44 ............................. ATAAGAGTCTTTTACGATTCGATGTACTTTCCGCCGATTCGAGA 997650 29 100.0 45 ............................. CCGCAACCATATACCTCACTTTGGACAGATTTTTCAAATTCGAGA 997576 29 100.0 44 ............................. ACTCAGGTTCTAACTTTATATCTCTTTCTATATGTGATTCGAGA 997503 29 100.0 44 ............................. TTGTCGGGGGAATTTCCCTGGTGAGGAGCTAGAATTATTCGAGA 997430 29 100.0 44 ............................. ATGACTAGAGAAGAGTCAAATGAAATGAAAAAGGAGATTCGAGA 997357 29 100.0 44 ............................. TTGATTATCAGCGAACCAAAAAATAAAGCGGGTCCAATTCGAGA 997284 29 100.0 45 ............................. CAGTGAGAAGGCAGAAAGCCTACATGCTTTAGAAAAGATTCGAGA 997210 29 100.0 44 ............................. TAGGTGCCGTCTGCAACACTGGCATAAATATCATTTATTCGAGA 997137 29 100.0 44 ............................. TCAACTTGCTCTCTGCCTCGAAAACTAAGTCGGCAGATTCGAGA 997064 29 100.0 44 ............................. GGATTATCGAACTTTTCACCGGTTGATAATACTGCAATTCGAGA 996991 29 100.0 45 ............................. TATAACACAGTCTCTTATTATGTTCACTCGGTGCAGTATTCGAGA 996917 29 100.0 46 ............................. CCATCCTTATCCAGAACCCTTATTTCTGCTGAAGCAGGATTCGAGA 996842 29 100.0 46 ............................. GAGCCTGCATCGTCTGATCTTTAGGAATTACTATAAAGATTCGAGA 996767 29 100.0 46 ............................. ATGGTTATGGGGTTGCCACTTTCTGGACCTTCTCCCTGATTCGAGA 996692 29 100.0 44 ............................. TACAACAGTCCTACCGGAAGGAGTAAAACCAAATGAATTCGAGA 996619 29 100.0 43 ............................. TCGTCTACCCATGCATTTGAGCGATCTACTCTTGGATTCGAGA 996547 29 100.0 42 ............................. CAACTTCGAAAGGCGGATAATATTCTTGATTAGCATTCGAGA 996476 29 100.0 41 ............................. TTAGTGGTGCTGGTCTGTCGAAAACGCTTAAATATTCGAGA 996406 29 100.0 45 ............................. TATAGGGGTTGGTGCTCAGACAACCATAGTGGATATTATTCGAGA 996332 29 100.0 45 ............................. ATTGCATGGATATATATGTCAAAGAGGTTTTCAATGTATTCGAGA 996258 29 100.0 45 ............................. AAAATAAGAATGCTGTAAAACCTAATTATGCTTTAGGATTCGAGA 996184 29 100.0 44 ............................. CGAATTTTGAGTTTATCGCCGGCGGCATCACAAATAATTCGAGA 996111 29 100.0 45 ............................. TCTGAAAACTGGGGGGTAAAACTTGGATCCCTTCCGGATTCGAGA 996037 29 100.0 42 ............................. TGATTTTCGGGAATGTAACTAAAATAAGAACCAAATTCGAGA 995966 29 100.0 43 ............................. TTCTCATCCGGCTTAACCTCCGAGTATTCCCCATTATTCGAGA 995894 29 100.0 44 ............................. TAAACTGCTTGTTTCCGGCTGCAACTTCGTTTCTTAATTCGAGA 995821 29 100.0 43 ............................. TTACTCTTATTATGTTCACTCGGTGCAGTGAAAGGATTCGAGA 995749 29 100.0 46 ............................. CTTATTGACAACATCACAGCAGATGTAGCTCGCCCCACATTCGAGA 995674 29 100.0 45 ............................. ATTTTTCCCATTTCTCTTTTGGTGTGTCCTTCTTGGGATTCGAGA 995600 29 100.0 44 ............................. GACTCCGGGTGTGTCAGATGAGACACCAATCATATCATTCGAGA 995527 29 100.0 44 ............................. ATCGATCTCAGATGCCCGCCGAAAGGGATTTCAGTTATTCGAGA 995454 29 100.0 43 ............................. ATACTGGCGGGGCAGGTGCGATAGGTCACCGCGTCATTCGAGA 995382 29 100.0 43 ............................. TTACTCAGAACTCCAGCATTCTCCATCTCTGCATTATTCGAGA 995310 29 100.0 42 ............................. TTTCGAATGTGCCAGATCCAGTTTTCCTGAATTAATTCGAGA 995239 29 100.0 46 ............................. CACGCTGCCAAACGTTGAAAACTCCCAGTACTCCACATATTCGAGA 995164 29 100.0 45 ............................. CTTATTTCCACATATTCAAAACTTTTTCAGTAGCATCATTCGAGA 995090 29 100.0 44 ............................. CGATTTCATGTTTTAAATTGGTAAAAAATGCGTATTATTCGAGA 995017 29 100.0 47 ............................. TCGAACTATACCCCTCCGGGTATTCTGGTAAGTTTAACAATTCGAGA 994941 29 100.0 43 ............................. ATCTTAGTTGTGAAATACCGAAGAAAAGCTCTCTAATTCGAAT 994869 29 96.6 43 ..........C.................. CTATACTATACTATATTCTATCTTAGTATAGTATAATTCGAAT 994797 29 96.6 43 ..........C.................. ATTTTGAAGCGTATTCGGAAAACGAAGCTTTATCAATTCGAAT 994725 29 96.6 44 ..........C.................. AAAACTGCTTGTTTCCGGCTGCCACTTCATTTCGGAATTCGAAT 994652 29 96.6 42 ..........C.................. ATTACAAGTTCGTTATCAGTCGAAATCTTAAGATATTCGAAT 994581 29 96.6 47 ..........C.................. TTAAAAGCTGTCTGGAACGCAAAAAACCCGGGTAAGCAAATTCGAAT 994505 29 96.6 44 ..........C.................. ATAATATATACTAAGTTAACGCCGTTGACATACATTATTCGAAT 994432 29 96.6 42 ..........C.................. ATCGAACTGTCTAAACTCAGCTTTCGAAAGTGTTATTCGAAT 994361 29 96.6 44 ..........C.................. ACCGGTTCAACCGATAACGAAAATTAACAATTTCTCATTCGAAT 994288 29 96.6 44 ..........C.................. ATAATATAAAGAAATAAATACAAATATACCTGTCAGATTCGAAT 994215 29 96.6 46 ..........C.................. ATCATTACAACCCTGAAATTAAAACCATGGAAGAACTAATTCGAAT 994140 29 96.6 45 ..........C.................. ATTGTGTTAATCCCTGCTTCATCGTATAAGCTCTGTTATTCGAAT 994066 29 96.6 43 ..........C.................. ATCTTATTAACTTCTACTAAGATATGTATAAGATTATTCGAAT 993994 29 96.6 47 ..........C.................. AAAGCGTTATAAACATCATCGGGAAGCCCTATAAATATTCGAATGCA 993915 29 93.1 1 ..........C.................A G Deletion [993886] 993898 29 65.5 23 .ATT..AA..C.............AG.TA TATTACTCACTTGCTATTCGAAT ACG [993876] Deletion [993847] 993843 29 96.6 43 ..........C.................. ATTAAAAGCTTAGAAAAACGGTTAAAGGCAAAGAGATTCGAAT 993771 29 96.6 44 ..........C.................. GGACGTGGGTTTTTACCTTGTCCTGTGCCGGGATTTATTCGAAT 993698 29 96.6 43 ..........C.................. AAAGATACCCTAAAAATAGAGGTAACCGAGGTAACATTCGAAT 993626 29 96.6 44 ..........C.................. TCAGATGAAGAGTGCGATATACTATGCAATTGTGAAATTCGAAT 993553 29 96.6 43 ..........C.................. TATATACTTTGAAACCTATTACTATATACTAAGTTATTCGAAT 993481 29 96.6 45 ..........C.................. ATGCAGAAAAAAATACAATAATAAAACCAACAAACAAATTCGAAT 993407 29 89.7 46 ..C......GC.................. TATCATCGGAAGTAAGGGGAGTTTCAGCGTCCAAGGTTATTCGAAT 993332 29 89.7 0 ..C.......C.........A........ | ========== ====== ====== ====== ============================= =============================================== ================== 97 29 98.7 44 GCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : TGTTTTTATTGCCTCAAAAAAACGCCATATAAAAGGAATTGTTGATGAAGTCCTGTTTCTGGAAGACGGAACCGCCGCTCCCCTTGAATACAAATTTGCCGAATACAAAGAGAAGGTCTTTAAAACCTATAAGTTTCAACTCGTCTTGCAGGCGCTTCTGATCCGGGAAAACTACAATATTGAAGTTAATCGCGCATATATTTGTTTTACACGCAGCAACAGCCTTGTCAAAGAAATAGAAATCACAACCTCTGATTTCAAAAAAGCCGAAAAGATTATACAGGAAATCCTTGATATAATTCAAAAAGGCTTATATCCAAAGACCTCTAGATCTTCTAGAAAGTGCGTAGATTGCTGTTACCGTAATATCTGCGTATGAAGAGGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGGCTAATCTCAGGCTTTTTCTAGCCAAATAACGGAAAATTTTGCCCTATTCGAGA # Right flank : AAGATAATCAGTTGAATAAGTTCACCTGGCAGACTCAGAGTTAAAATCAGCCCTTAAATGAATTGAATCGGATAAATAATGAGAAAAACAAGAGCGAGGGAAGCAATAAAAAAAGGAAAGGCAAAAATTACTTTTTTCTCAGGTCTGCTTTCTTCCTTCCCAATAACAGCCTGAAAACAGCCATAACCACAATAACAGCAGCCCAAAATATAATAGAGAATGGCTTTATAGGGATTTTAAACAAGTTAATTTTATTCTTCGTCATCCATGAGCCCCACGAAACCTGCACTTAATTGAATCTGCTATTTTCTTATTCATTTGCTCCTTTACCTTTTCTTCGGCGACTTTTGAGATATTCATAACAGATTCTTCAAACATCCTTAACTTCTTCTTTCTTCCTTATATTTCTTACTTTTGTGGGTCTGTTTTGCCCTAAATCTTTTCTTTCTGGCATTTGTTAACCTTGTTGAACATCCACACAGACAACTCTAACCCTCTAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1620629-1622048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009502.1 Methanosarcina thermophila CHTI-55 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1620629 37 100.0 37 ..................................... CAACAAATGCTTAGAAGAAATGAAAAGTTTAGTCCCG 1620703 37 100.0 36 ..................................... ACTGGCTCTACTATGAAGCTCGGGCTCCGGTAATAT 1620776 37 100.0 34 ..................................... CTCCAGCTTCACATGCAACAGGCTGTACTATTCC 1620847 37 100.0 35 ..................................... TCTTTTGACATGACCGAGGCGAGCGCATTCTCTTT 1620919 37 100.0 36 ..................................... CCCTGTTTCAAGCACTCTGGGCATAACTTTCGAGGG 1620992 37 100.0 37 ..................................... AAACTTACACTGAGTTTTCACCCTCTATAGAAGAAGG 1621066 37 100.0 38 ..................................... CTGCTATAGGTGACAATATAGATAATGGCGAAATTCTG 1621141 37 100.0 36 ..................................... TCGGGTAAACGTGCCTATGTGTTTTGTTGACAAGTC 1621214 37 100.0 37 ..................................... TCTGAACCTGGTTATCATTTCCAGCGACGGGAGAAAG 1621288 37 100.0 34 ..................................... CATATTGCGTTTGCGTGTTTGACCCTGAGAATTC 1621359 37 100.0 33 ..................................... CTATCTTGAGACCACAACATCGACCGAGTTTTC 1621429 37 100.0 34 ..................................... ATTGAACTCGCGGCTGAACTCGTTGCGCTCTTGA 1621500 37 100.0 36 ..................................... ATGCTTCCTCTATCATTTGTACCGTCCGATAAGCTG 1621573 37 100.0 37 ..................................... ACTATAGTAATCCTTGTGATCTCGGGCGTTATCGTTT 1621647 37 100.0 36 ..................................... TCAATGGACATCCAGAACCGAGAATCCTTTTTTATG 1621720 37 100.0 36 ..................................... AGGGATAATGGAGTTTCCGAAGCAGAATTAAAGAGA 1621793 37 100.0 36 ..................................... CATGTTAGCACTAGATGTAGTCAAGGCACTTAACGG 1621866 37 100.0 37 ..................................... TAACCACCACCATTCTTAATCACATTTTCCCTGTGGT 1621940 37 100.0 35 ..................................... CTGTGGATGTCATTTTTTCAAGCTCCTAATTTTAT 1622012 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 100.0 36 ATTCGAATGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AAAATCAAGCAGTAAAAAGGCATTGTTCAGTAAATTGTTATTGTTTTAGGTGTAGTTGAACACCCCTTTCCCCATTTTTTAATCTTCTGCTATTATCAGCCTTCTTATCCCATTTTTAACCTACGAGCAAGGCTGCGAATCAAAAGATGCACAAAAAATCGAGATTTAGATCTGTTTTATTCAAAAACTCTTTTTAAGGCTCAATGAAATTTGGAGAAAGCCTAAGAGCAAGAAAGTTTAGTAACGGAGTTGTTTAAATATCATCGTCTTTGAAATGTTAAAAATTACTATATAAACTGTTCTTTGAATTTATCTAAGATGACTTTAGATACAAAAGTTTAATAAAAAGAAAGGCGTATACTGAGATATTTCCAAACCTCTAAAAAACGCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGTAGTAATCTCAGGCTTTTTCTAGCCAAATAGAGGAAAAATTTCCCCT # Right flank : CATTTTACTTCGTAATGTTTTTGCATGGAGATATCATATTCGTGAACAAACCTATCAGATCTGTCAGATACTATATATTAATTGTCGAATGAAATAGAATTCAGGATAACCTTCTGAAAATAAGATCCTGTAATGTACCTGATATAGTCTAAGTATATTGTCAGATATAATATACACAAGCATGTAGGCTAATATAAGATACTTATAATCCTGAAGATTTATTCTTTACTTTTCTTATATAATTACACGTATAGGGGTTTAGCAGAGCTTATGCGATTGGATTTAAAATAATGGTTTTAGACCTTTAAATTATTAAATTTACATTAAAACCTTAATGTCTATGTGCTTGTTTTTGAGCTTCAATTGCATAAACTCTGTTTATAAAAAGGACAGACTATACAAATAATTGGAGGGGTATTAGAGTGAAGGAACGTGAAATACCAGGGCTTATAGAGCTGAAGATGGAATTTGAAAGCAAGCTGTCAGGCATAAAAGAGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 3012036-3015656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009502.1 Methanosarcina thermophila CHTI-55 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3012036 37 100.0 37 ..................................... GAAAAAATAGAACCCTGGCATGAAGTAACAGATTTTG 3012110 37 100.0 37 ..................................... TATTTTACGCAGATATCGCCGTTTCCGAAGATGTTTA 3012184 37 100.0 37 ..................................... TACCGTTATCCCCTCTTATGCGTTCTCCGATCTCTAA 3012258 37 100.0 36 ..................................... AGATTCTTAAGTTTTGTAATTATCATGCGTCTACCT 3012331 37 100.0 37 ..................................... CCAAACATACAGATGTGCTTTGCTGGGAGCTTGTCAA 3012405 37 100.0 35 ..................................... ATTTTATATGGCTATGCTTATCTTAGTCTTTTTTT 3012477 37 100.0 36 ..................................... CATCTATCGTTTGCCCTGGCTGAATCCTGTTAAGTA 3012550 37 100.0 35 ..................................... TTCAGAAATTAAAAATATTCTTCAGACTCGAAAAG 3012622 37 100.0 38 ..................................... AGTACTGCTCCTGCTGGAAGCCTCCCTTCCTTCAATCT 3012697 37 100.0 33 ..................................... TTTTCTGTTGCAAAACCAACACAGGAATTTTGA 3012767 37 100.0 40 ..................................... TAAATGCATGCCATCAACGAAGCTAACTTTCGTGTATTCT 3012844 37 100.0 36 ..................................... ATTTCTAGAAGTTCGGCCTTTTTGTACTCCTCAGAT 3012917 37 100.0 37 ..................................... TATAGGGGTTGGTGCTCAGACAACCATAGTGGATATT 3012991 37 100.0 37 ..................................... TTGTCAATGTCTGCTCTTTTCCATAGAGCTTCCGGGT 3013065 37 100.0 35 ..................................... CTAGGTTTATACTGTTATCCGCCGCGTGCATTTTC 3013137 37 100.0 37 ..................................... CTGCGACACATACGGCAACAGCAGGGAATTATAGATG 3013211 37 100.0 34 ..................................... TAAGCTCCATAACTGTTCCCGCTGTAACTGAAAA 3013282 37 100.0 35 ..................................... TTTAATTTTTCATCAAACGCTTTATCAGCTGCTTT 3013354 37 100.0 36 ..................................... TATCGAGGGCCAAGACTTCGACCAAGATAAATTAAA 3013427 37 100.0 37 ..................................... CTCCGGATCTGGTCAGAAGTTCGCCTTGGTCTTTCCA 3013501 37 100.0 38 ..................................... TAGAGTGTGATATGTCTGAATGGGTCACTTATTACCCG 3013576 37 100.0 38 ..................................... CGCGCTGGATGAGTTTCGGACCGTCCTGATCTGTTAAT 3013651 37 100.0 34 ..................................... TCACTCTATTTAGTTAACTATATATACTATTAAT 3013722 37 100.0 36 ..................................... CAGGCGGACTCAGGTAAGCCTGAAGAAGAACATAGA 3013795 37 100.0 36 ..................................... AAAGTTACGATACTTACAAAAGGCGGGCGCAGATCC 3013868 37 100.0 35 ..................................... TTGTTATCTTACAGCATCACTCGGAAATTCAACCC 3013940 37 100.0 37 ..................................... TTCTCGATTTTCTTACTTCTGTGTAAACTGATTTAGG 3014014 37 100.0 35 ..................................... CTGTGCCGGGTTTGTCTACCCTAGTTACCTGATGT 3014086 37 100.0 35 ..................................... ATTCGGATTGGGGTTCCCGTAAATCGTTTTTTCTT 3014158 37 100.0 36 ..................................... AGAGTAAAACCGACAACGAGAGACATAACATAATTA 3014231 37 100.0 37 ..................................... TCTGTTGCCTCTGCCCTAACTTCCACGCTATTAACAA 3014305 37 100.0 36 ..................................... TGTTTGGCTGAGATATTTTCTATGAGCTTTTCTTTT 3014378 37 100.0 35 ..................................... GTTGGTCACTCATATAGGAGAGCTGACCCAGATAA 3014450 37 100.0 35 ..................................... TATACTTCTGTACTATCTACTCTAATGTTCTTAGC 3014522 37 100.0 38 ..................................... TCAATATAGACATAATTTCCTCTATACCATACAGTTCT 3014597 37 100.0 36 ..................................... AACCATTGATTAGGAGCCCATACTCTTATTATTGCG 3014670 37 100.0 39 ..................................... ATTTATTTGATTGAAAGGGATAAGTACGCTTCTGAACTT 3014746 37 100.0 36 ..................................... ACCTAAGGCTCTCTGTTAAACGCTCTGGTTAATCGT 3014819 37 100.0 36 ..................................... TCAGCGTCACCCGTTTTAAATTCAATGTCGCTCACT 3014892 37 100.0 35 ..................................... ATCTTGAGTTTTTCTTCTGCACCAAGAGCCGTACA 3014964 37 100.0 35 ..................................... CTGAGAGGCGCACAGGGTAAAATAGCAGCAATCGG 3015036 37 100.0 37 ..................................... CCGGAAGCCCTGCGAAAGTCACTGATAAAAAGCTCAT 3015110 37 100.0 36 ..................................... TGGATTGTACATTACTTTATCATCTCCTTGTATTAT 3015183 37 100.0 37 ..................................... TACAGATAAAACTAATCAAGGGGTTCATAATGACAGA 3015257 37 100.0 35 ..................................... GCAGTTTTATCTCCATGAGCGCAAACGAGTTTAAC 3015329 37 100.0 36 ..................................... TCTGGATTGTACATTCTTTCTCTCCTTGTATTATCT 3015402 37 100.0 36 ..................................... ACCTGATCTTCCTCTTCATTGAGGAAGAATTCAAAA 3015475 37 100.0 35 ..................................... CTTTTCACAGCTTTTGCAATGTCGCTAAACTTGCT 3015547 37 100.0 36 ..................................... ACCAACTCGCCGACGCATGGGTATTATAGCCAAACC 3015620 37 89.2 0 .................................GGGT | ========== ====== ====== ====== ===================================== ======================================== ================== 50 37 99.8 36 ATTCGAATGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TAACTTGATACTATTTTATACACAGTAGTATATTAAATTTTTGACACAAAAATTTACACAGTTCTGGGAAAAAATCGCAGAGATCAACAAAAGGACGAAAGAAATTTGATAGCTTGTTAATATTGAAAAAACAGCAGCGCAGGGGTATGCCGTGAATGTAAATTCGCTAAAGATTTTTGTATGTGAAGTGGTAAGTTAAGCTATAATTTTAAAAAAGAGTAAAAAATATTCGATTTTATACAAATACCGTTATAAGCTTAAACAATAATCTTCTGGCTGCAGACTTAGGAAATTGACTTGTGCTGTAGAAAATATTGCTGGTTAAAGAATAAACCAAGATTTTAATAAGTAGAATAGCATATACATAATAGCCAAAAACCATGAAAGCATTATATTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGACCAATTTCAGGCTTTTTCTAGCCAAATAAAAGAAAATTTTCCCCT # Right flank : TAATTTTGTGCAGGAGTTTTTAGTCTGTACTTATCCAAATTCGCAGCAAAACAGTTCCATGAATTGTACTATCAAACTTAACATCTGCTAATATTTTTATATAAACTGGTTTATTTTAAACAAAAGTTGTCCGGTTATTGTAAGAAAGGACCGCATAATTTTATTTTTATCATAACTTTTATATAATACTATTATTATGTGTTCTTAGAGACTCGCATAATAAAAATGGATAGGAAAAATGATAGAAACTATTTGGATAATCGTACCTAACTTAATAGCATCATACATGGTTATGGTCAATAAAGCGTATTATGCCAATATGATTTATTGCTTCGGTTATCTTTTATTTATCTGGCATAATTATAATTTGGGTGATAGTTCACAAATGATTTACTTCACAATTTTAGAAATAATGTCAATTGTCGGGGTCTTTTTATATTTATACCAAACTGGAAGAATTGTTGGAATTAATGTAAAAAAGAAAGAGCAGCAAGTGGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //