Array 1 6874844-6873839 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6874843 29 100.0 32 ............................. AGCCGGCCTTTGTCGAGTAGCAGCGCGTCCAG 6874782 29 96.6 32 ...............A............. CCGATCGGCCTGATCATCCTGGCGATTGCCGC 6874721 29 96.6 32 .........................C... CTGTTGCGAATGGCAGGGGACAGTGCACGTGA 6874660 29 100.0 32 ............................. GCGCCACCCCGGCCTGCCAACGACTTCAGTGC 6874599 29 100.0 32 ............................. ACGCCAGCCGGACCGCCGGTGGTGCCTTGGGT 6874538 29 100.0 32 ............................. GGGCGCTCGGGATCCGCTCCCCGTCCAGGGTC 6874477 29 100.0 32 ............................. GACGTCACCGTCCACGACCCGCTGACTGTCGA 6874416 29 100.0 32 ............................. CTCGAAGAACAGGGGGCCGCCCAGCGTCACCG 6874355 29 96.6 32 .........A................... CGGCGGACTTTGTCCGTGAACCATGCGGACAT 6874294 29 96.6 32 .............A............... TGCCACCGCATCCAGGCCCCTTCGGACGCAGC 6874233 29 100.0 32 ............................. AGAGCCGGACGCGTCCCACCGCAGCTCTGTTC 6874172 29 100.0 32 ............................. ACCTCGTTGTAGGCGTCCAGGATTTCCATCTC 6874111 29 96.6 32 ...........G................. CTCCCGTACGTTCCGGCCGTGCGGCGCGTTTC 6874050 29 100.0 32 ............................. TTGGCCGCGCCATAGTGAGCGACCGGTTGCCA 6873989 29 93.1 32 .........A...........C....... ACGGGAGGGGAAACGGGGGCTACCTCCCGGGG 6873928 29 100.0 32 ............................. ACGACGTGCGGGCCGATCGCATGCACCGTCGG 6873867 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : CCTCACCAACTGCCCAGCCGGCCTACGTGGCTTCCTCACTCGCTGGCTCCTGGAAATCTCCCCAGGCGTTTTTCTCGGCAGCCCCTCAGCGCGAGTCCGCAAGGCTCTGTGGACAGAGGTCCGCCAGTACGCAGGGCAAGGCCGCGCCCTGATCGCCTACCAGACCAACAGCGAACAGGGATACGCCTTCGAAACCCACGACCACGCATGGCACCCCACCGACCACGAGGGCCTCACCCTGATCCACCGCCCCAACCGACGAGCCCCAGGCCCCAAGGACAACAAACCACCCGAGGGCCCTCGTCCCGGCTGGAGCAAAGCGTCCAAGCGACGAAGGTTTGGCAACAGATGAACTCCGAGAGACACGATGCGGCGCTACGCAAAATAATGAGATTCTGCCGCTCCACCGCAATTGCCCTCCACCACGAGGTCGATATGTCCGAATCGCTGAAAGTAAGCAAACCAGCTCATCACCTTCCTGAATCTGCAGCTCACGGCCT # Right flank : CTCAGTACCGGCGCGCACGAGCTGCACCCGGCCGACCGCTGACAGTGGTCCCGCCTGCGGGGCTGAGCTGGTCCCTGCGGGCCGCCCAGGAAGCCAGCGGTCACTGCCGGTGGGACAACCTGCCGGTGCGGACCGTACTGGTTGAGTGGCTCGTCGAGGCGACCGCCCCGTCCCACACTCAGGTGTAGCTTCGTCGTCATCCCGCCGCGGGACCGGCCGAGAGCTTCGTCTCCTCCAGAAGGGGACGCAGGCGCAAGTGCACCGGCCGCACCGTCATCGCGACCACTATGTGTCAGGTGGGCTGGCGGCTCGTACGCGACGGCCCCGCCGCCGTCGGTGGCTAGGAGTATCGTCATGCGGCTACGGTGCCCAATGTGCCGACTGCGCGGTGGTAGACGCGGAAGTGCGCTGTCACGCGGGAGCGTCTCGGAGTGACAGTCTGCGCCTGACCGTCGACGGCCGAGGAGCCAGACCGTGGCTGAAGTGACGGACGACTGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6878547-6877417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6878546 28 82.8 32 CC...........C....T.-........ GTGACCAGCCGGCCGCGGCCCCGTCAGGGCGG 6878486 29 75.9 33 C.......A..A.TCT.....C....... ACGCGGGAGGTGTGGACGGCGACGTTCGCGTGC 6878424 29 93.1 32 .............CC.............. TTCGCGCCCTCCGTCAGCAGCGCCACCCGGTG 6878363 28 82.8 32 A............C-........A.C... CACAATCGTGCCGACGCCTACGGGCTGGCACC A [6878353] 6878302 28 72.4 31 C..C.....C.A.CC.....-.......A CCCTGACTGGTATTCATGTTGCTCTGCAACG 6878243 29 86.2 32 C....A.......C...........C... ATCTCGCAGCGCCGTCCGGCGATTTCGGCCAT 6878182 28 72.4 32 CC..-........GC.T....C...C... TCAGGTAGAGCTGCGCGAGGTGGTAGGCCTGC 6878122 29 86.2 38 C.T.....T................C... ATTCCTGCCCTGGCAATGGCAGTGGCAGTGGCCGCATG 6878055 28 96.6 32 ..............-.............. GCGAGCGACTGGGCCTTGGCCGTGCCCTTGTC 6877995 29 86.2 32 C..C.........CC.............. TTCAGGAGCTGGTATCCACCGGGGCTTCGCGA 6877934 29 82.8 32 C..C....T..A.C............... CAGAAACACGCCTTGATCGAAAACTGCACGTC 6877873 29 100.0 32 ............................. GCGGCTCGGCAGATCGCCCAAGCCGAGCAGGG 6877812 29 100.0 32 ............................. ACGGCCATCATCATCAGGACAACACCGGAGAG C [6877797] 6877750 29 100.0 32 ............................. GCCTCCCCTGCGCACTCCTCTGGTGTCGGTGT 6877689 29 100.0 32 ............................. TTCGTGGTCTGTTCCAAGATCGCCTGGTGGAT 6877628 29 93.1 32 ...........A.............C... TGTACCGCTCGGGGCCCCCTGGGCCGCACCCC 6877567 29 100.0 32 ............................. TGTGGGCTGCGGCCCTCGGCTACCTTTCCCCG 6877506 29 100.0 32 ............................. GCCGTGAAACATGGCGCTGGCGAGGAGTACAC 6877445 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 89.8 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GGTGACCGTCAAGGTAAGCATTGAGCTTGGCGCACTGCTCAGGAGAGAAGGCCCCGGCCTTGAACATCGCAACCCACTCAGCGGCATCCCGCGGCCGTCCCAGAGCATCCACGACGATGGGCAGCAACAACTGCCGATAAATCGCCGGCTTCTGGGTCGACAGCTCGACAGCGATGTCCTGGAACTGCTCGGCCTCCAGAAGGAGCCGTCGTACACCAACTTCTTCGAAGGCGCCAAGCCCCCGATGGCCCTCCCCCGCAACACTGTTCGAGGCGCGCGCGGACAGCCACGCGTCGTCCAGCAAATTACACAACTAGGCTTCCCCCCCATACGTCTACGTCATAAGACGCGAGAGGCATCGTTACACAGCAGCCCCCAGTCCCGTCTCCAAATGCCAAAATGCACACGAGCCTCTGCCGGTCACTCGTGTTCTGGCGGTTCTGGGATCGTTCCAATTCTTTTGGTCCCTGGCTCTCCTCCCGGCTGGGTCCACCGATGTT # Right flank : AACTGCGGCGGCAAGCGGGACGATCAGGGCTCCTGCCCTCCGGCACGGCCCGTCGATCTGGGCATTCGTGCCGCTACGGACCTGGAGAGCGCACTTCGACAGGCCGACTGGCAGGCATCCGATGAGCACCAGAGGCGAGCTCGGACCGCCGCCGTGGCTGCGACCTCCCGGTCAACCCCAGCCCGCCCCCACCATCCGGCTCGACCTACTGATCGACTGCGCTCCCGACCAGGACCCCGGCGTTACCCAGCGCGACGAGCCCGTCAGCTTTGACCCCCGTCACCGCCGGTACGGGGCGCGTGGCATCACCTCACTCGCCGTGCACCTCCCTGCCACGGAAGCCGCCGGGCCACCGCCCCACGACCCGATCACCGCACTGAGGAACGATTGATGTACCTGACCCGCTTCCGCGTCAACACTGCGCGCCGCGAGGCCCGACAGCTCCTCGGATCGCCACACCGTATGCACGGAGGGGTGAACATGTCGTTCCCGCAGTCGCC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6895139-6894078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6895138 28 82.1 32 C..C.......A.CC............. CAGGGGCAATGAATGATCCGGCCGATGGCATC G [6895118] 6895077 28 100.0 32 ............................ GCGGTGGAGCGGGTGGCGCCGCGAGATCCAGG G [6895058] 6895016 28 100.0 32 ............................ ATCAGTGAACGCCGGGGCCGCACGATCAGCCT 6894956 28 96.4 32 ..............G............. GCGGACGACGTCCTGGCGTGGGTCGGGGATGA 6894896 28 100.0 32 ............................ GCGTGGATCGCGGCAGTAACAGCGGGCCCGGC G [6894873] 6894835 28 82.1 32 C..C.......A.CC............. ATCTGCCGCGCGATGAGGTCGCGGTCGATGCC A [6894818] 6894774 28 82.1 32 C..C.......A.CC............. AGCCGTAAGGTGGGGTTGAGCCTCAACGTGGT G [6894754] 6894713 28 85.7 32 C..C.........CC............. AAGTACCAGCTCACCGAGGCGCAGCGTTCTCC G [6894693] 6894652 28 82.1 32 C..C.......A.CC............. GCCCGACTCGCGCGCGACGCCGGCATCCCGGA A [6894632] 6894591 28 82.1 32 C..C.......A.CC............. ATGTCGTCTCCCGAAGAAAGGGGGAGGGCGGC A [6894571] 6894530 28 78.6 32 C.CC.......A.CC............. GATCAACGTGACCGCAGGGGCCGGGTGGGTCT G [6894510] 6894469 28 82.1 32 C..C.......A.CC............. TCGTCACAAATGCGGCGCCGTCGAGCGACTAT G [6894449] 6894408 28 89.3 32 ....C....................T.T GCGCGGTACGGATCCGTCAGGTCACCGTCAGG G [6894387] 6894347 28 96.4 32 ....................G....... CGGCCACGCGGCAGCCGAAGCGCCGGACAGAT C [6894325] 6894286 28 78.6 32 C..C.......A.CC.....G....... GTGGCTGCGAGCATGGCGGTCTCCTGGTCTGT T [6894264] 6894225 28 92.9 32 .....T..............G....... GACACCGAACTACGGAAGTCGATCACGACGCA T [6894203] 6894164 28 85.7 29 ..................A.G.....TG CACCCCATCGACCGCCCTTGGTCCACACC T [6894140] 6894106 28 89.3 0 ..........T.........G...C... | T [6894082] ========== ====== ====== ====== ============================ ================================ ================== 18 28 88.1 32 GTGGTCCCCGCGCATGCGGGTTGGTCCC # Left flank : GGCACCCACGACACCTGGGTTCGGCCCCAGGTCCAGCTCGGGAACCATTACATGGCCGACTTCATGATCGCCGGTGAGACTTCCCTAGGGCTTCGCTGGACGCTGGTCGAGCTGGAGAGTCCGGTCAGCCGCCTGACCAACCCCGGCAACAAGCGGGCGACGAAAACCCTGCGCCACGCGGTCGACCAGATCGAGGACTGGCGCAAGTGGCTTTCCAACAACCTGCACTACGCCCGCTCCGCGCGCGGTGCCGACGGACTGGGCCTGCCGGGCATCACGGCCGAGGTTCCCGGCTTGATCATCATGGCTCGCGAGGACGCCGACGACGCGGCTGCCGACATCCGGGAACTCCATGCCCGGCGCTCACATATCCAGGTACGCACCTACGACTGGCTGATGCGTATTAACGAGTCACCCGACCCCCTACGTCGAGACGCCCCCGACCAGCGCCTTCGACTCGCTTGAAATCAGCCGCACATCCACCCCTTCTACGCCATGAG # Right flank : TGGACGAGCCTCGCCATCGATGCCCCAGCCCACTGCCCCCGCCCCCGAGTGGTCCCGCGGATCGGGGCCCCGGGGGCACCGCCGACCTCCGCTCCCCGCAACCCGCAGAGTTGGTCCCTGCGAGACGAGGTCGGCTTCGCCTGCTTACCCCTGCTTCCCGCTCCCGCGGGGCGTGCCGCTTCACAACAGTCGTTCTGGTGTTGCACCAGCCCTACCGAAAGGGTGACTTTGTTCCGTCAATCGCGAATCGGCAACACAGAGGGTGCGGTCAATGCTTCAGACTCAACTAAGAGTCTCGGTTGGAGGGATCGCCAGCCTTCTTGCTGGCTCAGTGCACCGTCAGGAGCGCACAAGTTCACACTCAGGAGAATGATGAAGCACATGAATGGTGAGCGTCCGTCAGGGGCCTTAGCGCCTGTCATCTACGTACTAAGTGTTGTCCCGTGCCAGGTGATGGGCAGTGTCTTGTACCTTCAGGGGAAGTCTCCGCACGAGGTCTT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6899406-6896899 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 6899405 29 79.3 31 C..C.........C......A.G.T.... ACCAGCAGCCTGACTCCTTCGCAGTCTCCGC 6899345 29 82.8 32 C..C.......A.CC.............. GCGCGGCGGGTGCGCGGGACGTAGGTCGGCTC 6899284 28 69.0 32 C..C....T....CG-.A...A...C... AGCCGGATTGCGCCCCGATCGACCTTCGATGC A [6899274] 6899223 29 79.3 32 C..C......G..C.A.....A....... GGCCTCCTTCAGCCGGTCGTCGTCCGGGCCGT 6899162 29 75.9 32 C.AC.......A.CC......A....... GAGCGGTGGCAACTCACCCACCACGACGGCAC 6899101 29 75.9 32 C..C.......A.CC......C...C... ATGACGACCCGTTCGCTGATGTCGTGCATGCC 6899040 29 75.9 32 C..C......TA.CC......A....... TGGTCCATGATGTCGCCGAGATACTTGGCGGA 6898979 29 82.8 90 C..T.........G.......A......A CGACCGGGCGTGCGGCGGCTCGTCGCCTCCTGCTACGCGTCCGCATCGGAGTGGCCCGGAGCGGGCGGAGATGGCTCACCCGGCGTTCCG C [6898953] 6898859 29 69.0 205 C..T....T....CG..C..AA...C... GCGATCAGAGCTGGCGGAGTTTTCCCCTCGACTTTGTCTCGGGGCCGGCTCCTGTGCGGGCAGTCTGGGTGACAGCTCTCCGACACAAAGGGGCGGTGAACGTTAGCGGGTCTTGGTGCACAAGGGGGTGATGTCCTGAATGTTGGAGTCGGTGGAAGTGGTTCAAAGCCGTGGTGTGCGCGTGCAACGATGCAGGTCACGAAGT T [6898832] 6898624 29 82.8 31 C..C.........CC......A....... GAGGACCAGTGGAGGTCTGGCTGACCGGCGG 6898564 29 93.1 33 C..C......................... AGGCGGTCGATGCTGCTGCCAGCCTGGGTGAGG 6898502 29 82.8 32 C..C.......A.CC.............. GCCGCCTGATGGGCCGCCACAACTTCGAGACC G [6898493] 6898440 29 96.6 32 .........A................... TCTTAACTGCTGCCGCTGTTCAGCCGGACCGC 6898379 29 86.2 32 .C....G....AT................ TGCGGAGTCTTCGTTGAGCCCGGCCTTCTTCA 6898318 29 96.6 45 .C........................... TGGGACGCTGAGTTCGCTGAGGAGCTGGACGAGTGGTCCGCGGGG 6898244 29 79.3 8 T.......A....G.T......C..C... GCGGGTCG GA,T [6898223,6898235] Deletion [6898208] 6898204 29 100.0 32 ............................. GCGCCGCTCGTGAGGACCTGGGCGAAGGCGTC 6898143 29 100.0 32 ............................. TCGTACCACTCGTCGCCGATGCGGACCTGGCG 6898082 29 100.0 32 ............................. TCGTACCACTCGTCGCCGATGCGGACCTGGCG 6898021 29 96.6 32 ...........T................. TCCATCCCCTGCCCCTTGTCGTCTTGGTCGGC 6897960 29 96.6 32 .......T..................... GGGGTCGAACTCCAGCAGATCACTCTCGCCCA 6897899 29 93.1 32 .............G..........C.... ACGCTGCAAAATGCTGCACCGTATTGCACTGG 6897838 29 100.0 20 ............................. ACGGTCGGCAGCACGCTGTA Deletion [6897790] 6897789 29 100.0 32 ............................. GGCGCTTCCGACCACGTCAAAGACCTTGCCTC 6897728 29 96.6 41 ...............A............. GTGAGCACCCATACCACCCAGACCACCCAGTCCACCCAGGG 6897658 29 100.0 32 ............................. CTCCGGAAGCGCCTGAAGGAACTTGAGCCGAA 6897597 29 96.6 32 ....................A........ AGCTTCACGCCGGCCCGGCGATACACCTCGTC 6897536 29 93.1 32 ..T..........C............... ATCATGACCCCGGTCGACGTGCCCTGGTGGGG 6897475 29 93.1 32 ..A.....T.................... TCCTGGCGCCCGGTGACAGGGTCGAACGTGTT 6897414 29 96.6 32 ..........T.................. ACCGCCGACAACAGCGTGTGGGGCGGGTACGT 6897353 29 89.7 32 .................A..AC....... GCGATTAGCTCCATGGGCTTCTTCTGCTCGGG 6897292 29 82.8 32 C..C.......A.CC.............. TCGGCGGCGGCCTTGCGGATGTCGTCGTCGGA 6897231 28 79.3 32 C..C.......A.CC.....-........ GGATTCCAGAAGGTGGCGGTCCTCATCGCGGC 6897171 29 82.8 32 C..C.......A.CC.............. TGCTTCACCAGCGCTTCCGCAAGACGGCTGTA 6897110 29 100.0 32 ............................. TGGACCCAGGCGCCGGAGGGCAGGTTGTGTCG 6897049 29 96.6 32 ..............A.............. TCGGAGACCGTTCACCGCCGCCGAACCACCGT 6896988 29 100.0 32 ............................. TGGACTAGTGGCGCGCCCGTGTGTCGCCCGGC 6896927 29 79.3 0 ..A........A.CC.....T....C... | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================================= ================== 38 29 88.9 38 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CGCGGAGAAGCGCTCCGGCGTCTGCTCCCCGCACCCGCGGGGTTGGTCCCCACCCCGACGCCGAGCACTGGATCGCCGACCTGTGGTCCCCGCGCATGCGGGGTTGGTCCCTTCGACGAGGACGGCGGCACGCTCGCCGGCTGGTGGTCCCCGCGCATGCGGGGGACCTGCCCCTCAGCGCTCGCGGGGGTGGTCCCGCGGCGCGGTCGCTGATGGATCATCCAGGACTGCTGCGGGGGTGTTCCCGTAGCAGAGCGCCGCAGCTTCGCACAGGCAGACTGCTCCCCGCACGCGTGGGATGGTGCCGCCTCGCTGCTCGCTGTGCGGTCGTCGTCCTTCTACTTCGCGCGGTCGCCACGGAGCGCCAGGGCAAGACCTGAAGCCCTCCTGTCCCAAGAGCCGCGTGGCCTCGAAGCTGTACCTGTATGTCGTGAAAGCCTGAGTTAGTGAAAGTGGTTCAGAACATGGTGCTGGGCGTGTAACGATGCAGGTCACGAAGT # Right flank : ACCGTGCTCCGCAAGATGAACCAGGACTCCGGCTGCTCCCCGCACCCGCGGGGGGGAGCACTGCGCCGAGCAAGGCAGGGGCGGCCTTGCCCTGCGTTGCGTTCGCTCATCCCGACGAACGGAAAGGTCACGATGGCCGACGACCAACAGCTCTGGGGCTTAAACCGAGGTCGCCTCCCACGTGGGCATCAGCTTCGGCGCTGCCCGCAGCCGGAAGAGCCGGGGCAGCCTGCCCGCGCGCGACGACGACAGCGTGCCGGACCGGCCCCGCTGGAGGCTGGCCACGTTCAAGGGCTCGAAGACGGTCGGCCGTGGTTTCCGCAGCGACTGCACGGCCCCTCCCGTAGGAGCCCGCTCCATCTGGTTGACCGGCACCCGTAACCACGAGGACTGTGGTCATCACGTCCAAAACTCCGGTGCCGTCCCTTCTGTTCCACTCGTTACCCCAGGTGGAGGAACCGCAACACCGCGTCGCCGATTGTGGCTACGGTGGGCAAGTC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [29-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 5 6901045-6899734 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6901044 29 96.6 33 .....................C....... CATGAGCGTGTGGCCGAAGGGCCGTCCCCTTCA 6900982 29 96.6 32 .........................C... GCATCGGCGCACCACGGTGCATGCAGCTGATC 6900921 29 100.0 32 ............................. GCTCTGGTGATCATCGACTTGAAGAAGGTCGA 6900860 27 93.1 32 ....--....................... TGCGTCATGGCATGCAGTCGGACACCGAACTT 6900801 29 96.6 32 .................T........... ATCCAGCGCGGCCTGAATGCCGCCGCAGCGAC 6900740 29 79.3 32 C.AC.......A.CC.............. GTCTGGTGGATCGTCCCCGGCACCACGGCGTA 6900679 29 75.9 32 C..C....T..A.CC......A....... TACTGCGACGAACGGGAACGGGACAGGCAAAC 6900618 29 86.2 32 C..C........T..........C..... GCGTCTTGCAGGTCGAAGGCCCGGTTGCCCTT 6900557 29 96.6 32 ...........T................. TGCATTTCGGACTCCGTTCGGGTGGGGAAGGC 6900496 29 79.3 32 T..C.......A.CC......C....... CGGGATCGCGCAGATCCTGGAGCTGCTCTCCC C,C [6900476,6900479] 6900433 29 86.2 32 ...C..............C..C...C... CCGGAGTGGTTCGTCCGCCTCGACGGTCGGCC 6900372 29 82.8 32 ........T.....C......CC..C... GTCAGCGGAGCTCTGCAGATCCAGGACTACTC 6900311 29 100.0 32 ............................. GGCATGGCCTGGGACGAGATCCTGGAGACGGC 6900250 28 86.2 32 C..C.......A-................ ACCAGCTGGCGCAGCGGCGCCTGGTCGGCCGA C [6900236] 6900189 29 82.8 32 C..C.........CC.T............ GGCTGGCACCCGCACTGGCACGTCCTCGTCTT 6900128 29 82.8 32 C..T.......A.CC.............. CCGCCGTCGGCCGTGGTCGGGTGAGCCGGGTG 6900067 29 96.6 32 ..............C.............. CTTCGGGAGGACGGAGAGCGCGATGACGAAGC 6900006 29 82.8 32 C..C.......A.CC.............. GGACTCGCGATGACGAGCACGGTCGAGCGTCT 6899945 29 82.8 32 C..C.......A.CC.............. ATGATCCTCGCCGCGGAGAAGCGCTCCGGCGT 6899884 29 82.8 32 C..C.......A.CC.............. CACCCCGACGCCGAGCACTGGATCGCCGACCT 6899823 29 100.0 32 ............................. TTCGACGAGGACGGCGGCACGCTCGCCGGCTG 6899762 29 82.8 0 .....................GACC.G.. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 88.6 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GCGGGCTCGTCACACCACGGGCCACCGCGCTTCCAGCTCCTAGGTGATCGCCACACCGCTTCCCCCGGCAGACGCCGCCCCGGGCCAGACGTGCCTCCAGCCCATGGCCTGCCGAGCCATGCGTGCAAATGGATGACCACGCAGTTCGAACGGTCTCCGCCGGAGCAGCTCACATTCTTTAGTCACCGGCACGGAGAGCCTTGGCCCAGCTGCGACGCGCGAACAGCACCAGCCCGGCCTCCCCCTGGACTTCCACCATGGCGCTGGCTCAAACCGGCAAGATCCACCGTGACGGATACAAAGAGTCCAGTATTAGCCTGGGGACACCGACATCACATGCACCAGCGGTACAACGCCGGAGCGGTGCCCCAGGCCGCAAAGGCTCCGTGGACCACAACTGCCCTGCTGGACCTGCAACCTAATCGAAGGGCACTATGTCCGAATTGCTGAAAGTAAGCAAGAACAACTCACCGTCTTCCTGAAACCACAGCTCACGGCCA # Right flank : CCTCAGCGCTCGCGGGGGTGGTCCCGCGGCGCGGTCGCTGATGGATCATCCAGGACTGCTGCGGGGGTGTTCCCGTAGCAGAGCGCCGCAGCTTCGCACAGGCAGACTGCTCCCCGCACGCGTGGGATGGTGCCGCCTCGCTGCTCGCTGTGCGGTCGTCGTCCTTCTACTTCGCGCGGTCGCCACGGAGCGCCAGGGCAAGACCTGAAGCCCTCCTGTCCCAAGAGCCGCGTGGCCTCGAAGCTGTACCTGTATGTCGTGAAAGCCTGAGTTAGTGAAAGTGGTTCAGAACATGGTGCTGGGCGTGTAACGATGCAGGTCACGAAGTCTGCTCCCCGCGCCTGCGGGATGGTTCCCACCAGCAGCCTGACTCCTTCGCAGTCTCCGCCTGCTCCCCGCACCCGCGGGGTTGGTCCCGCGCGGCGGGTGCGCGGGACGTAGGTCGGCTCCTGCTCCCTGCAGCCGCAGGGATGGCCCCAGCCGGATTGCGCCCCGATCGA # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6904099-6903093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907981.1 Streptomyces sp. 2323.1 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 6904098 29 96.6 32 ....C........................ TGCGACAGCGTCTCGGCATAGCCCTGCGCGAT 6904037 29 100.0 31 ............................. CTCACCGCGGTCCAGCAGGCGGTCAACGCCT 6903977 29 100.0 32 ............................. GTGTGATCGACGCCGTTCGCGTTGATGTTGAC 6903916 29 96.6 32 ..............G.............. GCGCCCGGCCGGACGATGTCCCCCACGCTGTC 6903855 29 96.6 33 ...........C................. TCCTCGGAGTCCTGCCTTCACGAACTCGGGAAC 6903793 29 100.0 32 ............................. CACTCGCGGCCCAGGGTCTCGGTGCCGATACC 6903732 29 100.0 32 ............................. TCGGCCGCGAAGCACCCCCGTGCCTGGTCGGT 6903671 29 82.8 32 C..C.......A.........C...C... TTGGCGGGGCAGGACGGCGGCAGGAGCTTGCG 6903610 29 86.2 93 ......T.....TC...........C... AACAAGATCGACAAGCAGGATGGTGTCTGCAACTACTCACCGTATCCGCGGGGTTGGTCCCATCATGTGGATGCTCACTGGCGTCTCTCCGTT 6903488 29 82.8 32 C..C.......A.CC.............. GAGTCGGGGCTCTACTCCCTGATCCTTCGCAG 6903427 29 93.1 32 .C...................G....... GACCTTCCGCGCGTCGGTGACCTTGAAGCCCT 6903366 28 96.6 33 .................-........... TCGGTACCGAGCTGGTTCACAGCCCGCTCCGCC 6903305 29 93.1 32 ................TA........... CGAGTTGAGCACCACCGAGCCGACAACCGCGG 6903244 29 96.6 32 ......T...................... GCGGCGCAGCGCATGGCGGAGGCCATGAACCT 6903183 29 96.6 32 ..............G.............. GTGCCAACTCCGGTTGCCTTCCCATGGAATGC 6903122 29 93.1 0 ........T.............G...... | A [6903105] ========== ====== ====== ====== ============================= ============================================================================================= ================== 16 29 94.4 36 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CGGTCGGCGTCGCGGGGGATCCTGCCCCTGCACGATGCCCCCACCCTGCGCCCGAGACCATCTCGGGGTGGAGCAGTCGGCGGCGTACCGCACGGCGCCCTCTCGTCCTGTTCGGCCTCAGGCACCGCCGGCGGAGCCTTGTATGAGCCCGTCACTGTGGTAGGGGGAACAGCTCCCAGGCAACATCTCCATCAGCCCGACTGAGAGGCCTACCGTCGGCGGGCGGCCAAGTCGAATCGGGCATCGCGCCCCGCCATGACGCCAGCTCAAACCCGGCAAGATCCGGCGTGACGGATCGAGAGAGAGTCCAGCATTAGCCTGGGGACACCGACATCACCTGTGCCGGGTGCACGACGCCGGAGCGGTGCCCCAGGCCGCAATGGCTCTGCGGACCACTGCGCCCTGCTGGAGCCGCAACCCAACCGAAGGGCGTTATGCCCGAATCGCTGAAAGTGAGTAAAATCAACTCACCGTCTTCCTGAAACCGCAGCTCACAGCCT # Right flank : CGGTACCCGCGGTGTCGCATGCCGATGCACAGTTACGCTGCGTAGCAGATGGAGGGAAAGAGAGCCGGTCTGCCTACGACGGCCCGGGCACGGCACCACTCACGGCGAAATCACGTCGCGGTATCGAGCAAACACTGCGTCCCGCTCCCGCTCCCAGCTCCAGTCCGGGTCCCGACGGCGGAACTCACTAACGGCCAGCTCGAAGAATTGGTCGGACGGCTTCTGACTGGATCCATTGACCACCAGTGCCGACAGCATCGGCTCGGGGCCGGTGCTGTCCCGGCGGCAAACGTCCGCCAGCAGGAGCGACATCATCCGCCCGTGATAATGCACCCTGTGCTCAGGTGCCACGGCCGTGCTCAGCGACTTGTAGGTGTCGGTCCTGCCCTCTCGGGCCCACCTCTTCAGAACCCCCACCATGGCTTCCAGCGCGGCCATGTAGTCCACGTCCCCGTGCTGCATGCGAGCCCCCTCCACGTCAACTGGGCGCTACGGTACGC # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.31, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //