Array 1 186547-177403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXM01000007.1 Rathayibacter toxicus strain FH128 FH128_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186546 29 96.6 32 ............................T AAAAGTGTCGCGCGTGGATATGCTCAGACTAA 186485 29 100.0 32 ............................. GAGGTTGACAATGGCTCGTGGGTCAACGGCTC 186424 29 100.0 32 ............................. GTTGCCTTAAGAAGCGAGTCTAGGATGTTTGC 186363 29 100.0 32 ............................. TCCCGGCTCATATATGACGTAGCGTCGGTGGT 186302 29 96.6 32 ............................A AACTGCGCGGGCATCAGGGCGGAAAGCTCATC 186241 29 100.0 32 ............................. TACCCCACGGACGACGGCGGAATTACTAGGGA 186180 29 96.6 32 ............................G ACGTCGAGCGACATGTCGAACTGTATAGGGCG 186119 29 96.6 33 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACATC 186057 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 185995 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 185933 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 185872 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 185810 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 185749 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 185688 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 185627 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 185565 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 185504 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 185443 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 185382 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 185321 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 185260 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 185199 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 185138 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 185077 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 185015 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 184954 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 184892 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 184831 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 184770 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 184709 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 184648 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 184587 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 184526 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 184465 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 184404 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 184342 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 184281 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 184220 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 184159 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 184098 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 184037 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 183975 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 183914 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 183853 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 183792 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 183731 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 183669 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 183608 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 183547 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 183486 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 183425 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 183364 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 183302 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 183241 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 183179 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 183118 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 183057 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 182996 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 182935 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 182874 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 182813 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 182752 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 182691 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 182629 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 182568 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 182507 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 182445 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 182383 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 182322 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 182261 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 182200 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 182138 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 182077 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 182016 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 181955 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 181894 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 181833 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 181772 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 181711 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 181650 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 181589 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 181528 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 181467 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 181406 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 181344 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 181283 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 181222 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 181161 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 181100 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 181039 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 180978 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 180917 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 180856 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 180795 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 180734 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 180673 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 180612 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 180550 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 180488 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 180427 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 180365 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 180304 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 180243 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 180182 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 180121 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 180060 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 179999 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 179938 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 179877 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 179816 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 179755 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 179694 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 179633 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 179572 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 179511 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 179450 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 179389 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 179328 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 179267 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 179206 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 179145 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 179083 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 179022 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 178961 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 178899 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 178838 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 178777 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 178716 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 178655 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 178593 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 178532 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 178470 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 178409 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 178347 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 178286 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 178225 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 178164 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 178103 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 178042 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 177981 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 177920 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 177859 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 177798 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 177736 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 177675 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 177614 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 177553 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 177492 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 177431 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 150 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //