Array 1 332055-335134 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVN01000002.1 Roseomonas mucosa strain NCTC13291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 332055 29 100.0 32 ............................. ACCCGCGTGGATGCCGCCGAGGTGATCCACCT 332116 29 100.0 32 ............................. CTCATCAGCTCGGCCTCGAAATCGGCGCGCCA 332177 29 100.0 32 ............................. TGCTCCCCCGTGCTCTCGAATTCGGCCACGGA 332238 29 100.0 32 ............................. ACAGCCGAGCTACGCAAGCACGACAGGGATTT 332299 29 100.0 32 ............................. CAGGTCCCCTCCGGATCAGGGCCGTGTGGAGC 332360 29 100.0 32 ............................. AACCCCACGGCCGGTCCCCCCGGCTGTCATCG 332421 29 100.0 32 ............................. TAGAAGCGCCGCATCCGCGCCCGCCGCGCCGT 332482 29 100.0 32 ............................. GCGTCGCCGTCATCACGGTGGGCGTGGACACC 332543 29 100.0 32 ............................. GATCGTTCTCGTCGCCGGAATCCTGGGTTGGC 332604 29 100.0 32 ............................. GAGGCGACACTGTGGGGAGGCTGAGATGCCGA 332665 29 100.0 32 ............................. CGGCGTCAGATCCTCATGCTGCGTCGCCTCCA 332726 29 100.0 32 ............................. AGCGGCTAGACCACGCGGCGCGCGAAGCGGAG 332787 29 100.0 32 ............................. CCGGCATCCCCCGCAGCAATGCCCGGGCCCTG 332848 29 100.0 32 ............................. CGTGCCACGGCGGGAGTTCTCCGAGTAGCCAT 332909 29 100.0 32 ............................. CGCGCCATCGCGTCAGCAAGCTGCCCCTGCGC 332970 29 100.0 32 ............................. CGAAACCACGGGCGGGCAGGGCGGCCGCCAGG 333031 29 100.0 32 ............................. AGTTTGCCAGCCGCCTCATCCGCCGCCATCGC 333092 29 100.0 32 ............................. GAGGAGGAGACGACGCATCACGAGCGGTCCTC 333153 29 100.0 32 ............................. CCCGATCCGCCGACGGCGCCCGCTCCCGCAGA 333214 29 100.0 32 ............................. CGGCAGTAGACCCACCAGCCCCGCGCCGACGG 333275 29 100.0 32 ............................. GGATCGAGGTAGCCGCTCGGCGCGGCCCCCAG 333336 29 100.0 32 ............................. AGGAGGAGCCGGTGGAGTTTCCCTCCGCGTCC 333397 29 100.0 32 ............................. TGTCCTGCTTGACCCGCCCGCCCGAAAGCGCG 333458 29 100.0 32 ............................. AGACCCTTCGCAGGCTCCTGCCAAAGTCCATG 333519 29 100.0 32 ............................. ACCGAAAACGCCCTGGCGGCCCCTCCTAGGCC 333580 29 100.0 32 ............................. ACCCCGGACGGCACGCCCGTCGAGGGCGAGCA 333641 29 100.0 32 ............................. CCGGGACCGGCGAGTAGCGGAACAGTTCCAGC 333702 29 96.6 32 ............................C CTCTCTGCGCCTGCATGCCGGCCCGCTGGACC 333763 29 100.0 32 ............................. ATCCTGGGGGAAATCTTCACCCCCACGCGGCT 333824 29 100.0 32 ............................. GGCGAGGGCGGTAGCAGCGAGCCCGCCCCTCA 333885 29 100.0 32 ............................. GACTCCTGGCCACCATGCTCGCTGCTATCGAG 333946 29 100.0 33 ............................. GATACAGCGTGAAACTGAGCATTGCCTTGCGAC 334008 29 100.0 32 ............................. GCGCAGTCGTTGCCCAATGGCGAAAGCGGTAT 334069 29 100.0 32 ............................. AGGGTCAGGAGGGACGCCCCTCTCCCCCCAGA 334130 29 100.0 32 ............................. GGCACCTATGCAGTGGAGATCCGCCCCGGGAA 334191 29 100.0 32 ............................. TACGGCACCACGCTGGACAGCCTCTCCCTCCG 334252 29 100.0 32 ............................. CTGTCTGCGCGGTGTCCTGGCTGTCTCCGGGG 334313 29 100.0 32 ............................. TACGGGTGCGACCTGACCGGCCTCTCCCTCCG 334374 29 100.0 32 ............................. GCGATAACCTCGTCAACAGCCGCATCCTGGAG 334435 29 100.0 32 ............................. CCGTGGCGCATGGCTGATATCCGCGCCACCTG 334496 29 100.0 32 ............................. CCGTCCAGCACCTTGCCTGTGACGACGCAGCA 334557 29 100.0 32 ............................. AGCCGCAATCCTTCTCGGTCCGGATGTGGCCA 334618 29 100.0 32 ............................. TTCGAGGCAAATGCGCGCGTGCGGTTGATAGC 334679 29 100.0 32 ............................. CCGCCGTAGCACGGGAAGCGGCGGTGGTGGCG 334740 29 100.0 32 ............................. GAGTTGCTGGGAACCGCCGACCGCGAGCAGGC 334801 29 100.0 32 ............................. GGAGTAAAGGGCGATCAGGGGACACAAGGCAT 334862 29 100.0 32 ............................. ACCGGCTTCCCGTTCAGGCTCAGGATGGCGCC 334923 29 100.0 32 ............................. CGCTACGGACGCTCGGGTGGACCTTCGGGGAG 334984 29 100.0 32 ............................. AGGGCGCCCAGCCGGTGGAATTCCCAGGTGTC 335045 29 100.0 32 ............................. CCCAGGCAGATGCGGAACTGCTCGGAGACCAT 335106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.9 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : GTGCTGGGAAAGCTGATCCCTCTCATCGAAGAGGTTCTTGCAGCCGGAGGCCTGCCACTGCCGGCCGCACCCGAGGAAGCGATGCCCGTGGCTTTTGAAGCTCCGCCGGGATTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCGCGCCTGCGGGGAAGGCTGGCGGTCTGGCTCTTGGAGATCCGGGCCGGGGTCTATGTCGGCACCTATGGCCGACGTGTGCGGGAAATGATCTGGGAGCAGGTGCAGGCGGGGATCGAGGAGGGCAACGCCGTCATGGCCTGGGCCGCCCCAACCGATGCTGGTTTCCTGTTCGAGACCTGTGGACGAAATCGGCGTGTGCCGACCGACATGGACGGGTTCCGGCTGGTCGCCTTTGGCCCGGAAGCGGCATACTCTGCCCTGCCACCCATGTCTGACCAGAACAGACGTTCCAGGCGGTAGCCTCTTTCACAGCAGAATAAGATCGCCGAAACAGCCACTTACAGGAAGA # Right flank : GAGAGCCAGAAAGACCAACTGTGGATCGGCATGGAATAGGAACCCTGTTGGAGGGGTGATCGGCGTCCAAACGGGACCCCACTGACGGCGGGGTTCACAGTGGTTTCCGGGATGATCGGGAGCCAGTGCTGGGATGCTGGTCGTGGAGACAGTGGCAAAGATCCGGCGCCTGCACCGGGTGCAGGGCAAGTCGATCAAGGCGATCTGTCGTGAGCTCGGGATTTCGCGAAAGGTGGTCCGGAAGGTTCTGCGGTCCGGGGAGACGGAATTCCGCTACAGCCGGGCGCGGCAGCCGCAGCCCAAGCTGGGGCCGTGGCAGGCCGAGCTGGAGCGCCTGCTGGAGGCGAACGAGGCGCGGCCGCGGCGCGAGCGGCTGACGCTGGTGCGGGTCTACGAGACGCTGCGTGAGCTGGGGTACGAGGGCGGCTACGACGCGGTCCGGCGACATGCGCGGGGGTGGCAGGCGTCACGGGCGACGGCGGTGGCAGCAGCCTTCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2377315-2379383 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVN01000001.1 Roseomonas mucosa strain NCTC13291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2377315 32 100.0 33 ................................ CAGATCATGGTCCTGGAATCGTGGATCGGACGC 2377380 32 96.9 32 T............................... TCGGTCACCGTGCAGCCACGGTTGAAGCGGGG 2377444 32 100.0 34 ................................ GCGGCCATCGCCGCCGACCCGCTGAAGTGGGAGC 2377510 32 100.0 33 ................................ GACGCTGAACTCCGGGAATTCGATCCGTCGAAG 2377575 32 96.9 33 C............................... AGCCATGCCGGGCTGTCACCGGCCGGTGCCGGC 2377640 32 100.0 33 ................................ ACGGTGCCGAGCCACGCCGCGAACTGAGCTCGC 2377705 32 100.0 33 ................................ GTAGACATATCGGCGGTCCGACCGGCCGCTTAG 2377770 32 100.0 35 ................................ CGGGCGATGTTCTCGGTGCTGAGGCCCAGATCGCC 2377837 32 100.0 33 ................................ CGCTCATCTCAGAACTCCAGGCATGAAGGGGGC 2377902 32 96.9 33 A............................... AGCAGCGAGCGGCCATCGGGCAGGATGCGCGAG 2377967 32 100.0 34 ................................ TCCAGCAACTCGACGTAGCGGGTCTGGCGCTCGT 2378033 32 100.0 34 ................................ TTTCGGTTGGTCGGGGAGCACGCACTCGACCATT 2378099 32 100.0 34 ................................ GCGCTGGACGACGGGCAACTGGCCTGGCGCCGGA 2378165 32 100.0 32 ................................ ACCGAGGAGCTGCGGCACGCCGCGGCGCAGGA 2378229 32 96.9 33 C............................... ACATCAAGCCAGCTCAGGCCCACGCAACCAGCC 2378294 32 100.0 34 ................................ TCCTTTTCGCTCCGTCCCGCTCTCTCGGCCGCAG 2378360 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 2378427 32 100.0 34 ................................ AGCGGCGACACGCTGACCGCCACCGGCACCGACA 2378493 32 100.0 33 ................................ TCCGAGAGGGTCACGACGAGGCCATAGGTGTCC 2378558 32 100.0 34 ................................ CTCGTCCTCTCCAAGCGGCTCGACGAGCAGACGC 2378624 32 100.0 35 ................................ CCGGCCGATACGACCGAGTTGCTCCCTGAGTGGGA 2378691 32 100.0 34 ................................ GCCGTCCGGATCGCCAGGATCGAGGGCGGCAGGG 2378757 32 100.0 34 ................................ CAGTACGCCGTCGGCCAGACCTACACGATGGACG 2378823 32 100.0 34 ................................ CTGGCGGGCCCGGCACAGGATCACGCGGACCGTT 2378889 32 100.0 34 ................................ TCGCGCCAATCGTCAGCCATCGAAGCGCGCCAGC 2378955 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 2379022 32 96.9 34 ......................A......... ACCGAGGAGCTACGGCACGCCGCGGCGCAGGACA 2379088 32 100.0 34 ................................ TTCCGGCGCGTTTGCCTCAGACCAGAAGTCAACT 2379154 32 100.0 34 ................................ GTGAGCCGGGGGGGATAGACCACGATCCCATCGG 2379220 32 100.0 34 ................................ TACGGGGGCCGTGACTTTGGCCCGGTGTGGTCTT 2379286 32 100.0 34 ................................ TCCGGCCGGAGCCTGGACCGGGCCGTGGCCGGGC 2379352 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 32 32 99.5 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CTGGAAGTAGGCCAAAGCCATGCTCATGCTCATCACCTATGATGTCAGCACCGTGACGCCAGCGGGACGTCGCAGGTTGAGACGTGTGGCTCGTGCCTGTCTCGACCATGGTCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAAGTTGACCCGGCACAGTGGGCCGCGCTACGCGCGCGTCTGATGGCCGAGGTTGATCTGGAGCAGGACAGCCTGCGTTTCTACCGCCTCGGCGCTTCGGGCAGAGCCCGGGTGGAACATATGGGTGCAAAGCCCGTTCTGGATCTGGAAGGACCATTGGTCTTCTGAGATGACACAATTTGCGCGATCCGGTAGCGACCATGCCGTGGCGTGGTGGCTCGCGGAGCGCTGAACTCATTGAAAACAGAAGAAGAGTTTGTATAAGCGGAAAGACGCTGCCGGACCGACCTAGGCTTCCACCCTGGTTCGCGACGAGTGGCGGGCAAACCATGGAGCTTTCACAGAAAAAAGTGCCGGG # Right flank : CGCTATCAGTAGAGCGGCCCTAAGTAGTCGGGTTTGAATAACTGCTTCAGGCTGCCGAGGCGGCGAGCGGGCGACGGTCTGCCGGCTGGATGGCTCCGCGAAGAGCGGCGAGGAGAGCCGTCAAAAGGGCCCTGAGGTGGGCGAGGATCTTGCGGATGTTGTGGCCGCAGCCGCAGAGGACGGCGTGGAGGGCATCACCGATGGTGCCCTTGAGGGCGCAGCGGGCGAGGCGGCCGTCGGCCTTCATGTGGCCGATCTCGGGCTCGATGGCGCTGCGGCGGCGGAGCAGCCGGCGCAGGCGGGGCGTGAGGCCGCGGCTGGTGCCGCTGATGAGCACCCTGGTTGCCGTGACGCCATGGACGCGGTAGCCGCGGTCGACCACGGCAAGGCTGGGACGCTGACCGGTGAGGGTCTCGACCTGCTGCAGGGCGTCGGCGAGGGTGTGGCCGTCGTAGGGGTTGCCGGGCTGGCTGCGCATGCCGACGACAAAGCCGCCCTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //