Array 1 311489-310789 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYML01000003.1 Photobacterium aquimaris strain BS1 CFSAN065501_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311488 29 100.0 32 ............................. GCATCAAAACTGGTAGCGGGAATGCATTTAGT 311427 29 100.0 32 ............................. CAATAGAGCTGAAAAAACAAAACCTTTTAGCC 311366 29 100.0 32 ............................. ATCATGGTGTTGTGATTAACATTCACGCTAAT 311305 29 100.0 32 ............................. GTGGATTGGCAATAGAGCAATGGGTATGTTCA 311244 29 100.0 32 ............................. CCAGTATTCTTTATCGTGGCCTGTGCGCTCTG 311183 29 100.0 32 ............................. TCGTCCAGTGCGCCAGCACGGAATTGCTCAAT 311122 29 100.0 32 ............................. TGACAGTGAGAGCGCACATGGAGCGAGTAATA 311061 29 100.0 32 ............................. ACCGTTTAACTACCCAAATAGCGGCTGATTCA 311000 29 96.6 32 ............................A GTATCTATAAATCTCTGCACAAATTATTAGAC 310939 29 100.0 32 ............................. CTCGACATAAAACGGCTCAAGATTATCGTCTA 310878 29 100.0 32 ............................. CGTTAAATTCTATTTGTTTATCTTTTGACGAT 310817 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GGTTGTTCCGAGTGTGCTGGGAGTATTCG # Left flank : ATGCGTCGCATTGGCTTTTTGAGTATCTAGTTGCATATTTAGAGCAACAGTAATGTGACACGCTACGAAGCGTTTCATATTAAATCTGCAAGGAGAGTGAAGGGTATTGACCTATTGAAATAGCTGTACTTTCGAACTCATAATTTACTGCTTGCAAATAATAATGAGTTTTTTTCTATTATTTACTGGATAAAAAGCGAAAGTTGTAAATACTTATTAGGTATACAGCATAAGGGAATTACTGGCTCAATAGACTGAGCGCACCGACAACAGCGAGAATGGAATACGTTCTTGGGGCGGCTGTATAGTTCATATAAGCTCAAATCATTTCTTATTGAGAAATGAGTGATTTGTTGGAAAACAAACCAGTAGAGAGCCTGCCCAAAAAATTAAACTGAGGTCTTTTGCAATAGTGAAAGAAGAAGTTTAAACAGCACAAAATTGTCGGTACATTTTATACGTCTTATTTTATTTATACTAAACAACTAGTTAATTTTAGA # Right flank : AATTTACATGTTCAGATGGTATTAAATTGTGAGGGGATGATGAGTAAATCAAAAACAGCCAGTTTTATTCATAATTTTCCTTTGATTACGAGTTATAAAAATAGGAAGGAACTTGAGGCTCGATTTAATGCAGCTCAACAACTAAAGAATGTTGTATTACAAGAAGCGTTAAAACGGGCAGACCGTTACTTACAAGATGAAACAGTTAAGGAGGCGAAAAGACTTTATTCTAAAGCGCATCGTACGAAAGATAAAAATGAAAAGCAGCAATTAAAAGAAAAAGCGATACCATTATTCAATGCAGCAAGGAAAAAGTATCAATTAGAGAAATATTCATTAGATTCTATTGGTGGACAACATCGAAGTAATGCACCTCATTTGTATACACATATTGATAGCCAAACAACGAAAAGTATTTGTCAAAGGGTAATGAAATCAATTAATGGTTATTTGTTAGGGAAAAATGGACGACCTCACTTTGCTTATAAAGAAAGTATTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGTTCCGAGTGTGCTGGGAGTATTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 290517-289109 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYML01000002.1 Photobacterium aquimaris strain BS1 CFSAN065501_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 290516 28 100.0 32 ............................ GGAAACTTAAAGTTTTCTGATAACCGTTTTTG 290456 28 100.0 32 ............................ GTATGCACTCTCCGTTTCTGTATACAAAAACT 290396 28 100.0 32 ............................ GTTAGCGCGTTAAAGTCGCTATCGCTGAATGT 290336 28 100.0 32 ............................ AGAAGCTCGACTATTATTAGTTAAGTTGGTGA 290276 28 100.0 32 ............................ TCTCAGACAAGCGGTTTATCGTGGAGCTGGTC 290216 28 100.0 32 ............................ TGATATAACCACATTACCGACAGGTTCGTGAT 290156 28 100.0 32 ............................ AGCAATGAGATATTAAGTGAGTTTCGTGCGGG 290096 28 100.0 32 ............................ ATTTTGCGTGATATTCATCAAGTAATTGATTC 290036 28 100.0 32 ............................ ACTCATAGCGCAGCATAGGCAGATTTGAAGCA 289976 28 100.0 32 ............................ AGACGGTCGTTTCTCTCAGAAGTTAGCAGTTG 289916 28 100.0 32 ............................ TGACAATACTTTTACAAATGCCCCCAACGTCA 289856 28 100.0 32 ............................ ACATGTCCACTGATAACGCCCAGGCTAAAAAC 289796 28 100.0 32 ............................ GTTAGGCTCGTTAGTGGGGCGGCGTGATTTCG 289736 28 100.0 32 ............................ ATGAACTTAAATCCATTTGTAACCGTCCTGTT 289676 28 100.0 32 ............................ TGAAAGAGTGGGAGATCAAACCCCGAGCCAAC 289616 28 100.0 32 ............................ GAGCAATTGGCTCTCCCTTTAACCAGTCATCA 289556 28 100.0 32 ............................ TTGCGTATTGAGAAAGGGGATCACATTGAACC 289496 28 100.0 32 ............................ AAAATGCAGGTGCTAAATGGGATAGCATTGTC 289436 28 100.0 32 ............................ TTTAATAACAAGCGCATCATCAATCATAATAA 289376 28 100.0 32 ............................ TTTCATGATCAGCTGCACGCCATGAAACGCAT 289316 28 100.0 32 ............................ ACGAATGACAACAGAGAAAACGGTACTACTTT 289256 28 100.0 32 ............................ AAACAGCCCATACACTGCGGGAAGGGTGACAC 289196 28 100.0 32 ............................ ACAGCCGCCATTAGCGGCATCAACAATAGTGA 289136 27 82.1 0 ....................-..G.CTG | A [289112] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGCTTATTAAATGATCTTGAAGGTTTAGCGTGGTTAGAATCGTTGGGCGGTTGTTGTCGAGTCGGGGCTGTGATTGCAGTGCCAGAACAAGTTCAATACAGAAATATTTCAGCTAAAAAAAGCAATATGAGTAATGCAAAACTACGACGATTGATCAAAAGAGGCAATCTTGATCAAGATGGAATTAAACGTTACAAAGTAAAAATGCTGAGCCAAGGTTTTGAGCAGCCCTATCTTGATTTGTTCAGTAGTTCAACGGGTCAAATATACCGTAAATTTTTTGATTTTAGTGATTTGATGAATGATCCCGTAGAAGGCGTATTTGATTCTTATGGCTTAAGTAAAACAGCCACCGTTCCATGGTTTTAACCAATAAAAATAGCTCTTTAAAAAATCAATTTAAATACAACAGGTTAGATGAAGTGTAATAAATATTGGTAAAAATTCAATTATTATCTTAATTGTTTGTTGTAACTTGATTTTTGATTTATATTTTATT # Right flank : TTATTGGCATACTATAAAATATAACTTTACGCTCAAATTGTTATTTTTATTAGAAAAGCCAAACTAAATACGATGCAATTATGTTTTGCTGGTATAGATACATTATGTTTTCAGTGGAAGACATTCCGTTGATAAGTCATATTATTCATATTGTTAAGAACTTTTCTGTAAACCATTGAAGGTTAAAACTTTGATGTTTATCATGCGTTAACAAAGGATTTGTAGCCGCTTGGAATGAAATTTGGACAAAGAAAAATTTAACAATATTGCGAATCATATTTTTAAAGCAGAAGCTGTAAAAGTTGCTGTTTATGACGTGATTACTCATAGTATGACAGCATATAGAGCAGAGATTGTTCATGGCGTAACCCCTAATACTTTGAATCGTTATGTTAAGAAATTTAATCTTGAATTAGATTATTTACAAAGTATGGGTTTAAAAAAGTAATATATTAAAGTCCAGTGCTAGCTGGACTTTCTTAGAACATAGAATAATGCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 297335-298343 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYML01000002.1 Photobacterium aquimaris strain BS1 CFSAN065501_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================ ================== 297335 28 100.0 32 ............................ AGTCATGCCGCTGTACGGATGCAACGCTCCGA 297395 28 100.0 32 ............................ CAGTTTGTCCGCAGCTATTCCATCATTTATAT 297455 28 100.0 32 ............................ AACCACGCCAATGATCATTTATTGGGTCTAAG 297515 28 100.0 32 ............................ ATTAACGATAACACCGCTGTTCTTGCAAATGG 297575 28 100.0 32 ............................ TTGGTTAATGGCACAACACCACCAACAACAAG 297635 28 100.0 32 ............................ ATTGGTGCAGGTCAATATGAACCACTCTACTC 297695 28 100.0 32 ............................ CTTTGATTTTTGTCGCTGGCATTTCCCTGTCA 297755 28 100.0 32 ............................ TTTAAAGTCGCCGCCGTGTTCGTACGACTTCC 297815 28 100.0 32 ............................ GTTCCCGCGGCTTCACCGCCTAAACTAATTCG 297875 28 100.0 32 ............................ AAAGTATTCACCACTCATTCCACCTGCTGCCA 297935 28 100.0 32 ............................ AGTTGCAATACCTGTACCGCCATCAACACCAC 297995 28 100.0 32 ............................ AGCAAGCTGTCACTGCAGCGTAGAAAAGCCAG 298055 28 100.0 32 ............................ GTATGCCAACGTTTACTGAGCGTACATTAATA 298115 26 82.1 176 ..............CA...--..G.... GCCATATCTTCACTTTGATATTTCAGCGCGCTGTTAGTAGATTCCCTATCGCCCTCGCGGGCATTCACTGTAGGGAATGACGGGGTTAGGCTTGATGTAATCACAGAACAACCATTGGATGAAATTTATGGGTGTCCTGTCTTTACTGTCTTTGTTTGGTGGTCGCACAGATACAT 298317 27 89.3 0 .......................-T..T | ========== ====== ====== ====== ============================ ================================================================================================================================================================================ ================== 15 28 98.1 42 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGAAGCCAATTAATACACCAGCTTGAGATAGCATTCGTATAGCAGCTTGAGTAATCGACGTACCAGTTCCTAAAAGGATAACGGTCGTATTAGCAATAGGAATATTAAAATAGTGATTTTCTTTTTTTGCCTCTGTCAAATAAAGAACTCGCCCATCTTTTTGCATTACTCGACAATATTCTAAGTAGTAAATATTGGCTCGTTTAGAATGAAGAATTGCTTTTAAATCAGATGGTGAGAAGTCATCCATGACTAGTATTACCTATAACTTATTAATCATTTATTTGAATGATACCCTTTGTTATTATTTAAATAATTGATCATTGTTGCATATCCGATATTTCTTATTAGCAAAAGCGTAATCACAAATACCCTTTTTTATTTACTAACCATCCCACCCATATAAAACAACAACTTAAAATATCGGTAAAAAAAAGGGTTTTTGATGGAAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATCGTGCTTCA # Right flank : TTACCCGCGGCAGCCATTGCTTCTTTGATTTCATCAGAGCTATACCCCTTTGATGACAAATAGGCATAGGCTTTACTTTTGTCTTTAAAGTTCGATAGATCAAACCGTTTTTTAGCCAGTACTAATTGACAATTTTCATAAAAATCGACCTCACCTGCTTCCTCTAAATCGTAGAGTACTTGCTCAAGATGAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACCGTTTTACCTTTGAGCTTACGTACTAACTTCAACACTTCTGTTTCTAAATCTGCATTCATGCCTTTGATTTTAGCTTTACTTAATAATGTATCTGCGGCGGCGTGTTCTGAAATTGCAAATGAAATGTCCTGAAAACTAAATCCACGCTTAGTAAGATCGTTGGTTACTTTTTCTTGCGTCGTGTGGCTAAAATCCTCATAGTTACTTAGGCGACGGGTTATTATCGCAAGTTCTGATACCTGATTTTTATCGATGATCTCAGCTAA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.97, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //