Array 1 752-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNH01000053.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain CVM N51270 N51270_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 751 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 690 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 629 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 568 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 507 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 445 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 384 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 323 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 262 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 201 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 140 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 79 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCT # Right flank : TGAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-925 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNH01000015.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain CVM N51270 N51270_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1 27 93.1 32 --........................... GTCGTTCATCAGGCACTACCGGCACTTTCTGG 60 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 121 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 182 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 244 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 347 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 408 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 469 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 530 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 591 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 652 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 713 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 774 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 835 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 896 29 96.6 0 A............................ | A [922] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.1 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17687-16194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNH01000014.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain CVM N51270 N51270_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17686 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17625 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17564 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17503 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 17442 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 17381 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17320 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17259 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17198 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17137 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17076 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17015 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16954 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16893 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16832 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16771 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16709 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16648 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16587 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16526 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16465 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16404 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16343 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16282 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16221 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //