Array 1 99951-99250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUM01000005.1 Escherichia coli strain MOD1-EC5025 MOD1-EC5025_5_length_318992_cov_49.3628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99950 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 99889 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 99828 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 99767 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 99706 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 99645 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 99584 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 99523 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 99462 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 99400 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99339 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 99278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116945-115452 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUM01000005.1 Escherichia coli strain MOD1-EC5025 MOD1-EC5025_5_length_318992_cov_49.3628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116944 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 116883 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 116822 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 116761 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 116700 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 116639 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 116578 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 116517 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 116456 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 116395 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 116334 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 116273 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 116212 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 116151 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 116090 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 116029 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 115968 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 115907 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 115846 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 115785 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 115724 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 115663 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 115602 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 115541 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 115480 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //