Array 1 422120-423612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYK010000002.1 Salmonella enterica strain S15BD05371 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422120 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422181 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422242 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422303 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422364 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422425 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422486 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422547 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422608 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422669 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422730 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422791 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422852 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422913 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 422974 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423035 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423097 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423158 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423219 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423280 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423341 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423402 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423463 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423524 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423585 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439744-441647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYK010000002.1 Salmonella enterica strain S15BD05371 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439744 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 439805 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439866 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 439927 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 439988 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440049 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440110 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440172 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440233 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440294 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440355 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440416 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440477 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440538 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440599 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440660 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440721 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440782 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440843 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440904 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 440966 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441069 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441130 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441191 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441252 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441313 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441374 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441435 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441496 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441557 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441618 29 96.6 0 A............................ | A [441644] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //