Array 1 108492-105531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBW010000003.1 Salmonella enterica strain LB29 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108491 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108430 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108369 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108308 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108247 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108186 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108125 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108064 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 108003 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107942 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107881 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107820 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107759 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107698 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107637 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107576 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107515 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107454 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107393 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107332 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107271 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107210 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107148 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107087 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 107026 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106965 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106904 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106843 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106782 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106721 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106660 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106599 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106538 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106477 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106416 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106355 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106294 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106232 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106171 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106110 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106049 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105988 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105927 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105866 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105805 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105744 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105682 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105621 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105560 29 96.6 0 ............T................ | A [105533] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126124-124751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBW010000003.1 Salmonella enterica strain LB29 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126123 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126062 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 126001 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125940 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125879 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125818 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125756 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125695 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125634 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125573 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125512 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125451 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125390 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125328 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125267 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125206 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125144 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125083 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 125022 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124961 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124900 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124839 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124778 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //