Array 1 12914-13827 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARH01000013.1 Anoxybacillus flavithermus NBRC 109594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 12914 30 100.0 38 .............................. TGTGAATCGCCAGTCTCGTGAGTTTGTGATTCTCTTTT 12982 30 100.0 39 .............................. TATCTGGCGTTATGGTAAAAAAGTTTTCTCGATTATTTC 13051 30 100.0 39 .............................. ATTTTGACGTCTCGATCGCTCGTCTCGATCTTGCGCTGG 13120 30 100.0 41 .............................. TATGGTGTCCCTTTCTTAATTTCATACGGTGTTCGACGTTT 13191 30 100.0 39 .............................. ACTGGAGCAATATTCAACAAGGCGACATTTTGCACACTA 13260 30 100.0 35 .............................. TAAGGAGACAAAAATAAAATGTTTTTAAATCATGA 13325 30 100.0 37 .............................. TCTTCCACAACTACTTCAGCAACCAACGCTTTACGAA 13392 30 100.0 43 .............................. GGATTCTCAAATGGGCAACCTTCTTTGAAAGAACCATCTTCAA 13465 30 100.0 35 .............................. GAAGGACATGATCGTCGTCAACACATGCAGATTCT 13530 30 100.0 34 .............................. AAAGTAAAGCGTCATCGTCAATAAAATCAATGCG 13594 30 100.0 41 .............................. TTTTACGCCAAGTTTCTCATTTCCTCAATGATTGCTTTCCA 13665 30 100.0 36 .............................. CAAGAGAAAGGGATATATGCACTTGTCGGAAAAGAA 13731 30 100.0 35 .............................. TATCCACATCCTTTAATAGTGGCATCATTAAGAAT 13796 30 80.0 0 ..........CG.....T.....A.A...A | T,C [13815,13817] ========== ====== ====== ====== ============================== =========================================== ================== 14 30 98.6 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AATTAGACGAAGCGAAACAACGGTTGCTGTTTGGCTTTTTTGAAACGTATGTGAAACTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAGGAAAAAGAACAAGTGTTGGAACTCATTATTTCGTATGAACAAAAGGCGTTGGAAAAAGGAAGAGAAGAAGGAATGAAACAAGGGATGAAGCATATTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAGCATCACAGACCTTGTGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAATTGTATTGTGTATAACTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCGGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTCAGACGTATCAACGCATGGAGACTATTGACAGAATTTTCGGATGTATGTATAATGACATTGTATAGCTTTTCCATGTGTTGATTTATCAACACTTTTTGGG # Right flank : AGTCAGCGCTAAGTGCGCCGACTTTTTTGTTTATAGATCCGTTTTTCAAGTATACGACCGTGGGGCAAGAAAAAAGCGCGGAAAGTATGAGGCAATAGCACAAGCCCTTGCCTATTCGCAAGGGCATTTAAGACTACTCGTTCAACCGTTCTTGCACATCTTCTTCCGCCATATCGAGTATATGTGCAATCTCCGCCACGCTCATTCCTTTTTCGCTCATTTTTCGGATCGTTTCTTTGATTCCTTCTTCTCGTCCTTTTTTCAACCCTTCTTTCAACCCTTCTTTCAATCCTTCTTCCCGACTGCTGCGAATGTTCGAAAGTTGGTCAAGTAGCCATTTGAGCCGCATTTCATAGGCGTAGCGGTTTTCTGGGTCAACGCTTAAACTTTGCCATTCTTCTAACGCTTCTAAAATTTCTTGTTCTGTCATCGCGATTCCCTCCAATTCGCGAAACATGTCTTCATCCATTCGTTTTGTTCGGCTATCCACAGCCGATAAC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 156849-158035 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARH01000009.1 Anoxybacillus flavithermus NBRC 109594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 156849 30 100.0 39 .............................. AGCATAAGCCCTTCATACCACGGCGGAACGATGACGAAA 156918 30 100.0 39 .............................. TATTGAATCGCAAATACATAAATAGAGATAAAGAGCTGA 156987 30 100.0 39 .............................. ATGATCGAAGCATATCAAACACAATTTAAACACTTTTTG 157056 30 100.0 39 .............................. TAGCGTTGTATTCGTCGTTGCCTGCTTCTGACAACTCGA 157125 30 100.0 38 .............................. ACGAACGCCAGTGAAATAGGATATTTACACGATTATTA 157193 30 100.0 40 .............................. GTCGGACTATATTCACCCGTTGTCCCTTCACCTGTTCCAA 157263 30 100.0 39 .............................. TCAGTTTTTGATTGCTTGTCCAAATTAGGAGCATGCTCG 157332 30 100.0 36 .............................. AGTTTCTTCATCATCCCACACCTCTTTTACCTTGCC 157398 30 100.0 36 .............................. TCATCACTTTCTTGTGTGTCTTTTGTTTTAGTAACG 157464 30 100.0 35 .............................. CCAAGTCGCCCATCAATTCTACTTGGTGTACACCA 157529 30 100.0 40 .............................. ATTTTAAGTTGGTCGTTCGTACTGATCGTTTTTGGTGTTG 157599 30 100.0 38 .............................. TGTATTCTTGGCGTTGACAAAGGTGGGCACCCTGAAGA 157667 30 100.0 39 .............................. CGCGATGAGCATGCCGAACAAGCTGCGCAGATGGTCGCA 157736 30 100.0 39 .............................. TTGTTTTCTTGTTATTCCGCTTTTTTCACACTTTTATAA 157805 30 100.0 39 .............................. TAAGAAGCTTGATCATCTTTCGTCGCATTTGCATGTTTC 157874 30 100.0 37 .............................. ACAATCGTCGTCACCCCAGCTCCCATTGTTGTTTTAG 157941 30 96.7 36 .................A............ GCAGAAATGCAATATTCGCTTGCACAAGATGAAGAA 158007 29 83.3 0 A................C...-...A...A | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 98.9 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : CAAACGCTATCGACGAAACGAAGCGACCGCTTGTGCTTGGAGGAGTGTTTATTCTCATGCTTGCCTCTATTTTTTTCTCTCACCGTTCAAACATATACGCACGAAAAATAGAAGAAGAAGCATAAACCCCATTTTCGAACGAACTAAAAACGTGTAAAATAAAAGAAAATGGGCAAAGGGGGAATGCATGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTCATCGGTTTTGTTATTATTGCGGAAGTGAACGCTGAAGCATAAAACAGTCTCCAAATCGGAGGCTGTTTTTTATACAACAACTACTTGTGAATACATTCACAACTGTCGTCGACCTCTAATCTTGCAAAAACCCCGGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTCAGACGTATCAACGCATCAAGGTTATTGACAGAATTTTCGGATGTATGTATAATGACATTGTATAGCTTTTCCATATGTTGATCTATCAGCACTTTTTCGG # Right flank : AAGCTGTTCCGAAGTGTTGTTCGGAACAACTTCTATGTTGTTATGCTTTCCAGAGACCTTTTTTTTGTTGACGTGCTTTTCGTTCGGCCTCAAGAAAGCGTTGTTGATATTTGACATTTGGTTGAATTGTCATCACGCGTGCGTATCCGTCTTTGACGAGCGTTTCATTGTAAAGCTCTTTTCCAATCCAAACGTATGCTAGGAATCGACCGTATTTATCTTTTACCCCGACATCAAATTCGAGTGTGACAGTTTTGTTAGTTAATCGTTTTTTCGTATAGTTAGACGCTTCTTTCCCATATTTCTCGACTGGTTTTTGAGGATGGACGGTTTCTGGTGTATTAACCCCAATGAAACGAACTCGTGATGTTGCACCGTTAGAGAAGCGTACATCGATCGTGTCGCCATCTACTACACGAATGACTTTTACGATATGTTTTGAATTTACACGAATAGCAGGAACACCCGTGGCTTTACTTTTTTGGCGAATAATGTTGCCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 167940-169635 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARH01000009.1 Anoxybacillus flavithermus NBRC 109594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 167940 30 100.0 36 .............................. TCATCTAAGCCTCAACGTCCACCCAAACAAAGCTCA 168006 30 100.0 39 .............................. TCCGTATCCCCAACCATACAACGAGCGATCCGAGAACGA 168075 30 100.0 36 .............................. TCGACCGTGGAGCATTGATCGAACACAAGTGATCGG 168141 30 100.0 37 .............................. AAAGACAAAGTAACGGAGAAGAACAAACTTGGAATGT 168208 30 100.0 38 .............................. CTCCCATCATGATCTCACTCGTTGCGGGATTAGTCGGC 168276 30 100.0 34 .............................. GAGAAAGTGTTTGAAGGTGAGACGGTAGACGAGA 168340 30 100.0 38 .............................. AGTCTTGATTGATAGTCGATACTCGCGCATATCCATAA 168408 30 100.0 37 .............................. TCGACCAAGCAAAGTTCTTCAATTTCCAAGTCGATGA 168475 30 100.0 38 .............................. TGAATACAAACACGGCTTTGACGTGCAATTGCGCATGA 168543 30 100.0 36 .............................. TAGCAATTTTTTGCTATGATCGCTTCTACACCTTTT 168609 30 100.0 36 .............................. AACAGTGATGGACAATTGGGGCTTGGGGATACAACG 168675 30 100.0 37 .............................. AACAACCGTCATCAAGAAGGGAGTGAAAGGACGTCAA 168742 30 100.0 36 .............................. CACAGTAGGACGATTATGCGCAATAAGCACACTTTC 168808 30 100.0 36 .............................. CACAGTAGGACGATTATGCGCAATAAGCACACTTTC 168874 30 100.0 40 .............................. TTGTGTAATGTTGCGTTCTCGTTGCTGATTCCTAACACAT 168944 30 100.0 38 .............................. GGTGCTTGGTGTATCATGTATTCAGATGGAATTAATTT 169012 30 100.0 35 .............................. AAGAAAGGGGATAGAAACGTGAAGTACATATGGAA 169077 30 100.0 37 .............................. TCGCCATCGAGTTCACGAAACGCCATCGTCACCATGC 169144 30 100.0 39 .............................. TAACGCGCGTAAACGGATTATTTTCGCGTTTTATATCGT 169213 30 100.0 41 .............................. CTTCTTTTTCCTTGTCCAAATTTAAGCGCAAGTCTAAATTA 169284 30 100.0 38 .............................. ATACGACTAAATGCCGTATGTGCTTGCTCTTTCGACGG 169352 30 100.0 39 .............................. CTGGATTGCAGAAGGTGAAGCACCCAACAATCACAGTTG 169421 30 100.0 90 .............................. TGATACGCGTTGGATTGGTATATATTCGTACAATGGGAAGTTTGTATCGTACAAAATGTTTGCGCTTTTTCGCCATCCGCACGTATATGA 169541 30 100.0 35 .............................. ATAACACCATTTTCATCCTCTTGATAAATTTTCAA 169606 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ========================================================================================== ================== 25 30 99.9 39 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : AACGGTGGATGGGAAGAAAAAAACACAGTTCTTTGACCCGAACGATGAAGTGTTTCCATATTTAATGGAACGGAATTTTCATAACAAATATGAAGCATATTACGGGGTTCCGCCAAGCGAGCGACTACTGATTGAACCTGTCGATATTCGAAAAAGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATAACAGCGTGGAAAGGACGATATAAGCTCATTTCTTCTCCAGAACATTTAACATTTTTGTATCGTGTGGGCATCGGTGGACGGAATTCACAAGGATTTGGTATGTTCCGTGTTGTATCGAGAAAGTGAAATAATTCACAACTGTCGTCGACCTCCAATCTTGCAAAAACCTCGGGGGATCGACGACAGTTTATTTTTTGCAACTTTTTCAGACGTATCAAGGCATCAAGATTATTGACAGAATTTTCGGATGTATGTATAATGTCATTGTATAGCTTTTCCATATGTTGATCTATCAACACTTTTTAGG # Right flank : CATAGGTATAGATGAAAAGCGTAACTAGAACTTTATCTTAATTAGTTGAGAATATTCCTACCTCAAAGAACGTGAAGAGGATTATCAAGCAAGTAGGTGGGAAATGAATCGTTTTCGGATAAGGGGGAGCTACTTTTCATCTCGATTGTTTGACTGTTCGAGAGTCATTTGTAGCAGGTGAAAAATCGTTTGGGTACGCGTACCCTCTCTGTTTCTGTTTTGTATTTTAAAAGTGTTTTTGGAAAGCGTAAAACAACAGTTTGTTTTTGCATCGTCCTATCTCAATATTGTTCATTAAATTATGGTATACCATAACAGAAGGTGAAAGTCATGATCGTATATAAAGCGTATCGGTTTCGTATCTACCCAAATCAGAAACAAAAAATACTGATAAATAAAACGTTCGGATGCGCACGTTTTGTGTTTAATCATTTTCTTGCCAAATGGAACAACGCATACAAAGAAACAGGAAAAGGACTTTCTTATCAGTCTTGTTCTGC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //