Array 1 35214-34908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZP01000012.1 Bifidobacterium stellenboschense strain DSM 23968 Contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================================================== ================== 35213 27 100.0 45 ........................... GTCATCGCGGGAGGCGCGACGGTCGTCACGGTCGTCGTAGTCGCG 35141 27 100.0 33 ........................... ATCGTAATCACGATCGCGGTCGTCGTAGTCGCG 35081 27 81.5 24 C...ACG..G................. ATCGTAGTCACGGTCGTCGCGGTC 35030 27 92.6 69 ............A..G........... GTCGAAATCGTCGTCGCGGTCGCGGCGGTCGTCACGGTCGCGGCGCGGGCCGCGGGCGCCGCGACGGTC 34934 26 74.1 0 ......T..C..CG.G.-......G.. | C [34931] ========== ====== ====== ====== =========================== ===================================================================== ================== 5 27 89.6 43 GTCGGAACGACGGCGACGCGGACGATC # Left flank : TCGCCGAATCCGAACTGTAGCGCCCCACCACCAACACCCCACACCAACACCCCATGGTGCGGCAACACACAATCTCCACAACGGCGGAATACCAACGTTTTCCACCACCGCACCATGGGAGTTTTACCGCACCATGGGAATAACGGCGGGGAATAACGGTAGGGAATGACGGCGGGGAATGACGGCAAGGGAATAACGACATACAAATAGGGGGCCGCACCGGGAGATAATTCCGGTGCGGCCCCCTACGTTTGATCGGCAGCCCCTATGTTCGTCGTGCTACGCCGAGGTGGCGATCAGACCGAATCGATCAGCGATCAGTCCTCGAACGGATCGAAGTCGCGACGGACGCGGCGGCGCGGGCGCTCGGTGCGCTCGATGCGGTCCGCGTGGTACTCGTCGTAGTTCTCGTCGGTCGCGTAGCGCGGGTTGCGGTCGTAGCCGCCACGGCCGCGGCCGCCGCGACGATCGTCACGGTCGGAACGACGGTCGTCGCGGTC # Right flank : ACCGCCGCGGCGCGCGTTGTTCTCCTGATCCTCGAAACCGGGGATCGCGAGGGAGATCTTGCCGCGATCGTCGACGCCCTGGACGACGACCTCGACGGTGTCGCCCTCCTTGAGCACGTCCTCGACCTGATCGATGCGCTCACCGTTGGTGAGGTTGCGGATCTGCGAGATGTGCAGCAGGCCGTCGGTGCCCGGCGTGAGGTTCACGAACGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTCTCGCCGGCCTGCGGCACGTGCGGGTTGGCGATGGAGTCGATGATCTGCTTCGCCTTCTCGGCGGCCTCGCCGCCTTCGGAGGAGATGAAGACGGTGCCGTCGTCCTCAATCGCGATCTCGGCGCCGGTGTCCTCCTGGATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCAATCTTCTCGACCGGGACGGTGGTGGTGATGATGCGCGGGGCGAACTCGCTCATCTCGGCCGGGCCGT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACGACGGCGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18849-22217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZP01000006.1 Bifidobacterium stellenboschense strain DSM 23968 Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18849 33 100.0 34 ................................. AAAAATAGAAGGAATGATGACTGGACGCATTGAG 18916 33 100.0 34 ................................. ACGCACCAGCTGTGCACCGTGCGGTACCGCCCAT 18983 33 100.0 36 ................................. GTCACCGACCCGAGCGCGGAGACGCTGGAGGTGCGA 19052 33 100.0 32 ................................. GTTGCCCGTACAACAACGACCCGGCGGATTAC 19117 33 100.0 34 ................................. GTGAACGGCAGTTGTTTCAGGCCGTCGCCGCCGA 19184 33 100.0 34 ................................. TGGACCGCTGCCGTGCCGGCGACATCCCGAAACG 19251 33 100.0 34 ................................. CAGCATGCCGCGCTGCCGGCCACCGGCATGACGC 19318 33 100.0 34 ................................. AAGGCCATGGCACAGGGCATCGAGACCGCTCTAG 19385 33 100.0 33 ................................. TTGGACTGTTCCGCTCTGAAAAGGGGGATCGTT 19451 33 100.0 34 ................................. CGGCGTCTCCACGTCGATGTCGTCCACGAGGTCA 19518 33 100.0 34 ................................. TCGTCCGCGTAGTTGCACAGGTGTTCGAGGATCT 19585 33 100.0 33 ................................. GAGAAGATCGCGAGATGGTCGGGGGCGTGGCAA 19651 33 100.0 34 ................................. TCGAACAACACCCCACGGAAAAGGAGAACCAACA 19718 33 100.0 33 ................................. CAGCAGGCCCGGACGACCCCGAATCAGGGCTAC 19784 33 100.0 34 ................................. ATGAAATGAGTGATTATGATACGTTGCGCGACGG 19851 33 100.0 34 ................................. GGAGACAGCGCGTCGAAAATGCTCGAATGGTCGG 19918 33 100.0 34 ................................. GTGCAGATGAAGGCCGAGGACAAGGCGCAGGAAG 19985 33 100.0 34 ................................. GAGAAATGGGCCGAACAGGTCACGGCCATCACCA 20052 33 100.0 33 ................................. ACCCCGTCGAATCAGGGCGAACGTCAGGCGTTG 20118 33 100.0 33 ................................. TTAGTAATGACGGTGATCTCGTTGGTCTTGGTG 20184 33 100.0 33 ................................. GTTCGCGACCGCGAAGGGACCCGACGGCAAGTC 20250 33 100.0 33 ................................. TCCACGGCCCATTGCTTGACGGCTTCGATGGGG 20316 33 100.0 34 ................................. ACCACGGACACGCTCGCCGCCGCGACCGCCACGA 20383 33 97.0 35 ................A................ ACCCGCGTCCGAGATATTGTTCAAGGTCGCCGAGC 20451 33 100.0 34 ................................. CAGCAACGTCCGTCAGTACGGGCAACGGTGTTGG 20518 33 100.0 34 ................................. CAGCATGCCGCGCTGCCGGCCACCGGCATGACGC 20585 33 100.0 35 ................................. GTTCGGGACACGTTCACCGGCGAACTGTACGCACG 20653 33 100.0 34 ................................. GTGGTCGGGCTTCTGCCGTTTCACGGCCATGAAC 20720 33 100.0 34 ................................. ATCGATTACGGGTTGCCGTTGGATGATGACCCCG 20787 33 100.0 33 ................................. AATGCCCTCGTTGGGTGAGAACATCGACGCGCA 20853 33 100.0 34 ................................. CGTAACGCGTTGCCGTTGCGGCAGCGGACGGGGA 20920 33 100.0 34 ................................. TCCATCGACATCGACGGCGGGGAAATCAGGGTGA 20987 33 100.0 34 ................................. CACCGGTTCCCGCCGACGCTGGAAGACATCGCCG 21054 33 100.0 33 ................................. CAGGAAGCCGGTGCCGCTGGTCACTTGGGGCTT 21120 33 100.0 33 ................................. ATCGACCTGTTACGCCAGGGCACCGCGTCACAT 21186 33 100.0 34 ................................. CTCGCGGCCGCGTGGCCGTGTGCTGCCGGCCGCG 21253 33 100.0 33 ................................. TCTATCGGGCGTGTATACGCGTATACGCGTATA 21319 33 100.0 34 ................................. CCTATACCGAGTATGAGTATCGGGACAATCCGAC 21386 33 100.0 34 ................................. TCCGGGAGCTGTGACATGAAAAGGCATCTTGGTT 21453 33 100.0 34 ................................. CTCACGGACAAGTGGACCGAGTTCACGGCATGGA 21520 33 100.0 34 ................................. CGGTATTGGTTGTCGTCCCATTGGTCGGCGTGCT 21587 33 100.0 35 ................................. ACCTGTATTGGGCGCGGTGGAACGGCTCGGACAAG 21655 33 100.0 34 ................................. TCTGAAATCTCCGATCATCCTATCGTGGAATTCC 21722 33 100.0 33 ................................. GACAAGATGGCGAAGATCACGCGCAGCGGCGAC 21788 33 100.0 33 ................................. GAGCAGCTGCCGCGCCCCGCGACCCCGCCCATA 21854 33 97.0 32 .......T......................... TCCTTGTACTTGGGATAATGCTTTTTCGATGG 21919 33 100.0 33 ................................. CTGTCGTCCAGTCTATCGCAATGCGTCCGCGAG 21985 33 100.0 33 ................................. GACTGGGAGCATGCCGGTGCGTTGGCGGCGCTC 22051 33 100.0 34 ................................. TAAGGGGCGGTGCGTACGTGCATAACGCGGCGAG 22118 33 84.8 33 ....T..T....GA...............G... CAGCCGAGGAAAGTCATCTGGCCGGCCGCGTTG 22184 33 78.8 0 ..T......T................C..GGTC | T [22189] ========== ====== ====== ====== ================================= ==================================== ================== 51 33 99.2 34 GTCGCCCCTCTCACGAGGGGCGTGGATTGAAAT # Left flank : TACAAAATAGCGTTTTCGAGTGTTCGGTGACTCCTTCTGATTATCTGATACTCAAGCATGATTTAGCGGCAATCATGGATGAAACACTCGATAGTTTACGCTATTACAATCTCGGTTCGAATTATTCCAAGAAAATTGAATATCGCGGCCGACAGCGTCATATACCAGTTGATGAGGTGATGATGCTCTGAGCGTCTACTGGTGGCGTTGTCATTGATGATGATGAGGTGTTTCTTGTCCCGCTTCCCGTGGTATCGGTGCGACAGGCAAGCTCTCATCGGAAGGACCACCTTTCGCACCATTCAAAAAGAGGTTCTTGGGGCTGATTGTGTTCCCCATGCTGTTTGATAACCGAATAGTGGACATTTTCTGTGTGCGGTATTAAATGTTGTGTGCCTAGGTTGGCCGTATGTAGAGCAATCCGGCAGCGTATGCGGTATGCTAAGGCTCGGAGTTGGACAGCATGTTCCATATCGTGAAATATGCTGTCCAATTTCGCT # Right flank : CGGTCAACGGCCCTGCACGTTTTCATGTCCTTTTGGAGTCCTTGTGGTAGGGGCGCCGACGATTCAGACCAGTCGGTCTCGTCGACTGCGGGACCGCCCAACTGGCTTGGAGCGAGTGTCCAATCGGACACCGACCTGCTATTGGCTGTGTCCCACTATGGGACGTCGCTCGGGTTGTTCGATTAGGTTGTTCGACCGGACTTGTTCGGCACGAGTCGAGCAAGTCCGGTCGAATAGGCAAACCCGAGCCCGTCGCCCGGTCGCTCCAGCCTCCGGCGAAACCACATCGCCGCCGCATCCGCTACCGCAACTACTGCAACTACCGCATGGTGGCTCCGACTCACCGCAGCTGGCCGATGCGGGTGGCCAGCGTGCGCATCGTCTTCAGGCTCGCCTCGTAGCGGGCGGCGGCCACGATGAGGATCACGCCGCCGATGAGCAGCCACACCCACCAGAACTGTCGCGAGAACACGGCCAGCCACGGCCACAACACGGTGACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCACGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //