Array 1 96729-93545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000023.1 Nocardia farcinica strain BJ06-0054 NODE_37_length_107956_cov_10.517236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 96728 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 96667 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 96606 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 96545 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 96484 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 96423 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 96362 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 96301 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 96239 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 96178 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 96117 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 96056 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 95995 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 95934 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 95873 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 95812 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 95751 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 95690 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 95629 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 95568 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 95507 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 95446 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 95385 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 95324 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 95263 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 95202 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 95141 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 95080 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 95019 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 94958 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 94898 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 94837 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 94776 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 94715 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 94654 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 94593 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 94532 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 94471 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 94410 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 94349 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 94288 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 94226 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 94165 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 94104 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 94043 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 93981 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 93920 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 93860 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 93799 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 93573 28 71.4 0 ...G..TG.....CG.TC..A....... | G [93546] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 107786-105913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000023.1 Nocardia farcinica strain BJ06-0054 NODE_37_length_107956_cov_10.517236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 107785 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 107724 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 107663 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 107602 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 107541 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 107480 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 107419 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 107358 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 107297 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 107236 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 107175 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 107114 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 107053 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 106992 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 106931 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 106870 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 106809 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 106748 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 106687 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 106626 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 106565 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 106504 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 106443 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 106382 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 106321 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 106260 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 106199 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 106138 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 106077 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 106016 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 105940 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= =============================================== ================== 31 29 98.8 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGG # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 258408-257099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000007.1 Nocardia farcinica strain BJ06-0054 NODE_10_length_278583_cov_10.469018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 258407 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 258346 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 258285 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 258224 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 258163 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 258102 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 258041 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 257980 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 257919 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 257858 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 257797 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 257736 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 257675 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 257614 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 257553 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 257492 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 257431 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 257370 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 257309 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 257248 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 257187 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 257126 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1413-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000033.1 Nocardia farcinica strain BJ06-0054 NODE_56_length_58663_cov_10.641981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1412 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 1351 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 1290 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 1229 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 1168 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 1107 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 1046 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 985 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 924 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 863 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 802 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 741 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 680 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 619 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 558 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 497 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 436 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 375 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 314 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 253 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [200] 199 27 85.7 0 ........A.T....A....-....... | A [190] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4354-3655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000033.1 Nocardia farcinica strain BJ06-0054 NODE_56_length_58663_cov_10.641981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4353 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 4292 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 4231 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 4170 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 4109 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 4048 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 3987 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 3926 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 3865 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 3804 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 3743 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 3682 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169059-170492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPB010000006.1 Nocardia farcinica strain BJ06-0054 NODE_9_length_282684_cov_11.348924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169059 29 100.0 33 ............................. CTCCCGGGGCGCGTAGTCGACTTCGAGGAACCG 169121 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 169182 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 169243 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 169304 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 169365 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 169426 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 169487 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 169548 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 169609 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 169670 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 169731 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 169792 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 169853 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 169914 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 169976 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 170037 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 170098 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 170159 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 170220 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 170281 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 170342 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 170403 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 170464 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //