Array 1 35626-37769 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJM01000032.1 Prevotella copri strain YF2 YF2_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 35626 33 100.0 34 ................................. GGTTTAGGTGCTGCTGCTATTGCTGGTGCTGGTT 35693 33 100.0 33 ................................. TTCTGATAAGGTTGAAAAGACTAAAGCTTTTAT 35759 33 97.0 34 ................................C TTATCGAGCCAACGGAGATTTGTATCAGCTAGCT 35826 33 100.0 34 ................................. GAAATGCAAACTGAGCAATCTGAGACGCAGCAGA 35893 33 100.0 32 ................................. TTCTGGGCAATGCCAGAAAGAAGACCGCCGGT 35958 33 97.0 34 ................................A GTAATTTGCCTTTAGATTATTTCACCGGTGTTCT 36025 33 97.0 33 ................................C TTTATCATCTTTGAACGAACATTTTGTGGGCTG 36091 33 97.0 32 ................................A GAGCGTATGAAGAAGTTTATCGAGATTATCAC 36156 33 100.0 32 ................................. CCTTGCCCGAGGTTTTCAAGTCGCAAACGACC 36221 33 97.0 34 ................................A CGACAGCACTCAAAACCAAGTTGAACGGCATCGC 36288 33 97.0 32 ................................A AAAAGCCAAAGCAGCAGGAAGCCATCGCACAG 36353 33 97.0 33 ................................A AGTTCGGGAGGTCTTGACCGCACACCGTGATAA 36419 33 97.0 34 ................................G TACTGGTTGCCGAATGTCAGCGTATCTTCGCTTT 36486 33 100.0 33 ................................. TTAACTATTTAAGCAGACGGTAAGAGCGTATGG 36552 33 97.0 34 ................................A AAGACCACTCATTTTGCTGAATGTTCAAGTCAAG 36619 33 97.0 33 ................................G GGTCAAAATATGTCAAATGATATACAGCGTTAT 36685 33 97.0 33 ................................C AAAAAGACCACCAAGTAAAGAACCAGCAACACC 36751 33 97.0 32 ................................A AACTGAGAGCGGAAATTCGATGTATCAATCAT 36816 33 97.0 33 ................................A TATTGTCAGAAGGCGAAACATAATCAATATTAC 36882 33 97.0 33 ................................A AAGGTTACAGACGGCAACATGCAAGAATATGTT 36948 33 100.0 33 ................................. GAGCCGCTTACGTGGTAAGCACGCAAAACTATC 37014 33 100.0 34 ................................. CAGAGAGGAGGTAACAAATGAGGAAGATTATAAA 37081 33 100.0 32 ................................. TCGTCCCAGCTGCCAAAATAGACGTTATCCGT 37146 33 100.0 32 ................................. TAGTAGGATTGAGTTTTTGGAAACGGCATACA 37211 33 97.0 33 ................................A CGCTTCGGGCGGTAAATTATAAGGCAAACAGAT 37277 33 100.0 32 ................................. CCTAATAGAAGCTGTTCATTATTGCAAAAAAC 37342 33 100.0 32 ................................. CGCAACGTCTGAGCATCGGCACGCATATTGTC 37407 33 100.0 33 ................................. GGTCAAAATATGTCAAATGATATGCAGCGTTAT 37473 33 97.0 32 ................................A GAATAGTAACGACCCCGATTTTGCTAATCAAG 37538 33 97.0 33 ................................A TAGAAATCCAAACCTAGAAAGGCGGATAGCGAA 37604 33 100.0 33 ................................. TTGCTAGAGGTTAAAACCACTTATGTAGGTTAT 37670 33 100.0 34 ................................. TTTTATTGCAAGTAATACACAAAGAGTTAAGTAA 37737 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 33 33 98.4 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Left flank : TGATGATTATCCAGTGTTTTTAATCAAGTAGTGTATGTTTGTATTGATTACTTATGATGTAAACATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATTTTGACGGAATCTCAGTTTTTCGTATTGAGGGACCAGTTGAAAGGGATTATTGATACTGAACAAGATAGTATTAGGTTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTCGAGACTTTGGGTAAGGATATGGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATGAGGGTGCGAACCTATAGTATTGCAAAATAACCTATAGTTTCGCACCTTCTTAAAATCAGTGACTTACAAATATTATGCCTTTTATAATATTTTACGTGTAATTATTTTGCCATCTTTCGCAAAATAATTATCTTTGCATCATGATATTCAGCTATTTGCTGAATATGCA # Right flank : AGAAAACAGATTTTATTTTCTGAGCCCACTTGAAAAAGTCATTTTTACGAAAACGTGCCATTGATTGTCAATAAGTTACAATGACAAAAAATATGATTCGGGACTTCTTTAAGTGGACTCAGTTTAGTATTATACAGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCAGCCACAGCATTCGTCTCCTCCGGTCACTGCATTCGATTCCTTCAACTATCGCATTCGTCTCCTCCGGTCACTGCATTCGACTCCTTCAGCTATCGCATTCGTCTCCTTCAGCTATCGCATTCGACTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGCAAAAAGTGGTTGTTCGGAATTCCGAACAACCACTCTACATGGTGCTGTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9163-7964 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJM01000030.1 Prevotella copri strain YF2 YF2_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9162 37 100.0 35 ..................................... TGGATACGCCCTTCTCCTCAAGATAAGACGCACAA 9090 37 100.0 37 ..................................... ATTTTATCATCATAGTCATCAGTAAACTCTACATGAT 9016 37 100.0 36 ..................................... TATTCATAATAAGTTCTCCTTATTTTAAAAATTAAT 8943 37 100.0 33 ..................................... CATTTGCTTCCAAGACTCATCTGTTAACTCGTT 8873 37 100.0 33 ..................................... TTTTTAGCTTTATTCTTATGTGAATAGTAAGTA 8803 37 100.0 40 ..................................... TAGTTCTCCTATTTTTATTAATACGTTTATTAGCAGTAGA 8726 37 100.0 36 ..................................... TAAGTACACCGCCCATAGTTGACCAATGACCAGTAA 8653 37 100.0 36 ..................................... TAAGTACACCGCCCATAGTTGACCAATGACCAGTAA 8580 37 100.0 36 ..................................... TGTAGGATTGTCGGTCTCCTGCATCATCTTTGACAC 8507 37 100.0 35 ..................................... AGGCTCAATACTCAGTATCTGAGTATCAAATCTAT 8435 37 100.0 35 ..................................... ATTAGCATCCATTCCTCCAAGATAACCACGAGTAT 8363 37 100.0 36 ..................................... AACTTCTCTGCTACCATTCCTCTTACCTGACCACAA 8290 37 100.0 35 ..................................... TTTGTTCCTTTCGATCCGATATTTTTTTTATCATT 8218 37 100.0 35 ..................................... AAGTTAATCATTTGTATAATTGTTATAATGTTATA 8146 37 100.0 35 ..................................... GGATAGACATTAATGCTTGCACCATTGCAAGCTGA 8074 37 100.0 38 ..................................... CAGGCAAAGAAGCACATTGTTGCTCCTGAAGCATGCAC 7999 36 91.9 0 .....................T...........-..A | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 99.5 36 GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Left flank : CGATCTCCATATGTTTATGGTTTTGATTTCTGGGTGCAAAGGTAAAGCGGGATTTTGAAGTGGTATTTCACTGACTCGATTTTCTAGGATTTTGTTGGTTAGTGGTTGATTTTTACACCTTTTATGGGGTATGGATTATTCGTTCATCACTTTTCTTGTTGTCGTTAGAATCTTTAATGGAGGGGAGTAATGGATATGTAGGATTCATGGTTAATGGTAGGAGATAGCCTTCTTTTTCTGAAGTTTGTTAGTGCTGAATGGTGGGGTGGTGGGTGGTCTTGTCGTTTGTCTTTAGGTTTCTGTCTCCCTATTTGGTTAACAGAGTTAAATTTTTGGGATAAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAAAAGTCGTACCTTTGCACTCGCTAAGAAATAGTTAATTTTCGGTTAAGAAAGGTAAATATTTGTTTAGTGAAGTTCTTTAACTTATTGATAATCAATAATGTCTTATAAGGTTGA # Right flank : TCATTTGTTTGTGAGTTATTCATAGGTTATTTTGGTTCATTGTTAGGGTTTACTGTTACATGAAAAAATCCCATATCAAGGTTGGTTGCCTTGGTATGGGATTGATTTTAATATAGTGATTTGCTGTTCTGTTCAGGTCTGTTTGGACCTATCCTTTTTTACTTCTGGTAGGAATCATAGAGTTCCTTGGCCTTGTCTTTGCCTAGGAAACCGGACAGTTTTTTCCAGATTCCACTCTTGTCAAATGGTTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGATCCTGTAGCAAGCGGGTTGAGGTATTGAAGAGGGCGTTGCTGTCGGATTCGTTGAGCTGTGATGTCTTGAAGTCTTTCAGCCATTTTTCCACCTTCTGGAAGCATACCTTGAAGTCCTTGATACTATAGTTTACGCCATCTCCAGCGAGTTTATCAAGGGTGGTGCCAAGACCAGCAGCATGTTCCTTTTCTTTAGCTTCCTGAGCAGCCTGTGCTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 19026-18252 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJM01000030.1 Prevotella copri strain YF2 YF2_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 19025 37 100.0 37 ..................................... CGCCCGCATCCTTGCGAATCTTGTTCAACTCTTTCAA 18951 37 100.0 35 ..................................... CCCTTTGCATTGAATGTTGCAATATCATCAGTGAG 18879 37 100.0 39 ..................................... GACTGAAATTTTCATACTCTTAATTTTTTTAAATGTTAA 18803 37 100.0 39 ..................................... TCACTCATTCCTAATAGCATGCATCCCATTCGTCTTCCT 18727 37 100.0 34 ..................................... TTAAGTTGTTTATAGAATGTAATTTTACCAGTGT 18656 37 100.0 33 ..................................... AACCATGAATCGTTACCTGTTGTTAAATAACTC 18586 37 97.3 34 ............C........................ TCGTTCGCCTGGCTGATAACAGTCTTTCTCAGCA 18515 37 91.9 37 ............CT.............A......... TTCACTGATAATCATCGGCATAATCAGGGTCAATGCT 18441 37 94.6 35 ..........T.C........................ ACAGCACCGTTTTTGCCTACTGAAATTTTCATAAT 18369 37 100.0 44 ..................................... TACCAAACTCCATCAGGAGTAATAGTATATGCTTTGCGGTCAAA 18288 37 78.4 0 ............CT..........T....GA...TCT | ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 96.6 37 GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Left flank : ATAGGTGCTTTGGTTTTCTGGGTGCAAAGGTAAGGGTATATAGTGAAAAGATATTTCACTTGCTCATTTTTCTTGTTTTTTGTTGTTTTTGTATACTTTCAGTTATATGCAGGACTCATGCTTTTTCCTTTATTTATTGGACTTTTATACTGTTTGTTGTTTGACAGATAGGAGGGCTAGGGGCGTGAGAGAAGTTTCTGAAAAGTGAATTTTTGAGTAAGTTTCTCATGCTCTTCTTGGCGACTTGCTTATTGTTTGGCGTTTCTTTTTGTTGATTGTTGAATTTGTAGTCTATAGCGAAGAACGTACAATGGTTAATGGAGCTTAATTTTTGGGCAGAAAATGGCTAAATATTTAATAATAATTGGCTTGCATATCTCAGAAAAAGGTCGTACCTTTGCACCCGCTAAGAAATAGTTAATTTTCGGTTAAGTAAAGTCAATATTTGTTTAGTAAAGTTCTTTAACTTACTGATAATCAGTATAGTCTTATAAGATCGA # Right flank : CTGTTTGATAGTACCTATGTATTTTATTATTGATGGTGTATTTCTGTTAAATGCATTGATCAATTGTTATAAACCAAAAACGTTGGATAGAGGGAGAGGGTGCATAGACTTTCTCATTTTTACCACCAATGTTTTGCATAGCAGTTGGATATTGGCCGGAATTGGGCTGACTGAGAAGTGCCAACTGCATTAAAGAAAGGTTGCTCCCAAGTATGTACGACTAAATGTAGGATATACTTGCATAGTGGCAAATGAGCACTAACCTTGTTGCTTTCATCAGCCTTTCTACCTTTGGTTTGGGAAAGAGCTGTGTCACTTCTCAACTAAGTAGGTGTAGTGTTCATACTCTTACATCTGGCCAAAGGTTCTTTATTTTTCCACTTGGTTGTGGTTTTGAATGAATCTGGAGTGGGTTGATTTAGTGGGGATTTTTTGTTTTTGATATGCTTGCTTTTGAGCAGTCCATTCTTTAGGGTACACCAAAATGGGGCATACCCTAA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 28345-27493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJM01000030.1 Prevotella copri strain YF2 YF2_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 28344 37 100.0 38 ..................................... AAGTGTCGCCATCTTCATAACGTTCAATAGTGACAGAA 28269 37 100.0 37 ..................................... AAAATTAATAATAAAGAAAGAGGGAAATCCAAGTGGA 28195 37 100.0 34 ..................................... TCGTATTTGCACATATAGTCCAGCTTAGTGAACT 28124 37 100.0 36 ..................................... CCAGAGAAATAGAAAGCGTGCAAAGGCATCACCAAA 28051 37 100.0 38 ..................................... ATTGTATCAAGAATATCTCTAAAATTAGGATTATCTAT 27976 37 97.3 37 ........................C............ TTCATATAGCGCAAATCGTTATGGAAAACCAGCTTGA 27902 37 94.6 36 ....T...................C............ TTTAATTAATTAAATTGTAAAACATGTTTATTATCT 27829 37 97.3 37 ...........................A......... TGTGCTGCCTGCCCTGTCATCATGTTGGCAGGAATTG 27755 37 97.3 38 ....T................................ AGATTATACCAATCAATGACAACATTCTTCATCACACT 27680 37 97.3 37 ........................C............ ATCTGTGAGGCAGACATTGCTGAATGGTTTACCTGAC 27606 37 91.9 40 ............CT..........C............ GCATTGTTACATGCAAACTTCATTTCTTCCAATGAAGTTA 27529 37 89.2 0 ........................C.........TTT | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 97.1 37 GTACGAGACCATTGTCCACTACAATAAGGATTAAGAC # Left flank : ACTCACTCAATTTTCCCTTTTTTTGCTACTTTCTTTTGTTTTATGCCATTTTTATGAATGGATACAACTGTGTCGCTAACAACTTAACCATAGCGGCTTTGGTTTTTCTGGGTGCAAAGGTAGGAGAACATCGTGAAATGATATTTCACTGGCTCATTTTTCCTGTTTTTTGTTGTTTAGGGTGCATATAATACCTTATTATATATATGTGAGGAATAGTTTTTTGTAGTTTGATTTGTTGGTTTATGATATTGTGATGGTGTAGTTTACTTTTATGCTGAAGAGTGCTTTTTGGGTTAACTCTTTGATTTGTTGTTAACAACACTAAATTGTGAGGTCTAGAAGGCCTAAATATTTAAGAATAATTGGCTTGCATATCTCAGAAAAAAGTCGTACCTTTGCACCCGCTAAGGAATAGTTAATTTTCGGTTAAGAAAAGTTAATATTTCTTTAGTAAAGTTCTTTAACTTACTGATAATCAGTATAGTCTTATAAGGTTG # Right flank : GAACTGCCTACGTGCTAAAGACTTGTGGACAGTTCAACGTGCTTTTTTCTTAGAGATACTTTTTAAGGGGGTACTGAAATAGATTTCTTTTAAAGAAATGGCCTCATTTTCAAGTATTTTGAGGAATTATCAGTAAAATTCCTAACGAAAAGTTGGTATTCTATTATATTTTTAATACTTTTGTACCTTTGTATAAAAGTGCTTAAACTTATAATAATGAATAGATATATTTTCAATGAATGGTTAAACAGGCGAAATGTTCTGGTAATCCCTTTGCTCTGGGTTGGTGCTGCTTTGACATCTGCTCAGGTTGGGCTTAACTGCTTGTACTCTTTTCTTCTTATGGTGTTGGCTGTTTATGTGGCTAGCAAGGATGGTATTTGGCTTAAGTCAGATAATTCTGAAGTGAGGAACGTGTTTCTGGTAGCTATGTATTCTATGTTTGACAAGAAAGATTAAACTGTTTTATATGGACTTTTACTGTTAACTATGTGAGTTTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATTGTCCACTACAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //