Array 1 917-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000304.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_304_length_1038_cov_10.5442, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 916 37 100.0 37 ..................................... TTATATATCAGTCGGCAACTGTTTAACCATTGTGTAT 842 37 100.0 37 ..................................... GCCTTAACTTCTTCTACAGTCACTGTGTTTAGGAAAT 768 37 100.0 37 ..................................... TCGTTAGTAATCTTCATGATGTTTAATTTAATGATTA 694 37 100.0 37 ..................................... ATACGGGAAATACTCGTAACGGTCGTGCTCGTTAACA 620 37 100.0 34 ..................................... AAACAACACTTTAACAAATATTCCCATAAGCATT 549 37 100.0 35 ..................................... AATACCATTTTTTAGTAATTTAATAAAAAGGGTGA 477 37 100.0 37 ..................................... ACTCGGATAGGCTAACTATACGAGCATCAACAGCTGT 403 37 100.0 35 ..................................... ACATTAATAGGTGCATTCATAACTGCATTAGCGAG 331 37 100.0 37 ..................................... TATGCCCAAGTACACTAATACGAGCCTTCTTGAACAA 257 37 100.0 35 ..................................... AATGGATGCACTCATAACTGCATTGGCAAGCATTG 185 37 100.0 40 ..................................... CTGTTTCAGCGTTAGCACTTGCTGCATCCGCAGCTTCTTT 108 37 94.6 0 ...................................TT | CT [73] ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 99.5 37 CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Left flank : AGATGTGGTTTTTTATTATGACGCAAAGCTAAAAGGAAAAATTAAGATAGAAAATATGGCATCGCCGAGACGCTTACGGATTAAGACTAAATGTTATATATCAGTCGGCAACTGTTCAACC # Right flank : TTCGCAAGTTCAACTTGCCAGTTTTAATTTGTAAATATCGCATATATGGCCCAGCTCCTCAGATCTGTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 95-1005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000267.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_267_length_2039_cov_6.0107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 95 37 100.0 38 ..................................... ACTACTATTATCGATGATATTAGTAATCATTAAGCTGT 170 37 100.0 37 ..................................... TTCAAGAAATTGGAATTTGAGTTGCTCTGTGCAACAT 244 37 100.0 33 ..................................... TTCTTTGTACACCACGTACCGACACGCTACCAA 314 37 100.0 36 ..................................... CGGACAACACCGCATGCAAAGAAGAACTTACCAGCT 387 37 97.3 37 ..................................T.. CTACCATTTTTATAAGCCTCGGCATGTTCTTATCAAC 461 37 100.0 36 ..................................... CCCATTATCACTTCCGGCACTTGCTGCGGTTTCCAT 534 37 100.0 38 ..................................... GCAAGTACTTGTTTGCTATCAGCCCAACCCTTTACGGT 609 37 100.0 36 ..................................... CTGATGTTACCACAAGCAAAGAAGAACTTACCTGGT 682 37 100.0 35 ..................................... TTCGAAATCAGGACGGTCAAGCAACAGACGAACAA 754 37 100.0 37 ..................................... CTTACGGTTGTGCCTTCCATTGTCGGTTGTTGTTTTG 828 37 100.0 33 ..................................... AACTCAATAATATCCATAATCTATATCTTTAGT 898 37 97.3 33 .....G............................... ACTGCATTGTTAATCTTTGACAAAGAAACAGCT 968 36 81.1 0 ..........TG...............-CC....A.T | CC [992] ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 98.1 36 CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Left flank : AGATGTGGTTTTTTATTATGACGCAAAGCTAAAAGGAAAAATTAAGATAGAAAATATGGCATCGCCGAGACGCTTACGCTGCTTCGGCTGCTAAC # Right flank : TCCGCGACTTAATCTGATAAAACAACCTCTTTGGGCGGCATTTTTTGCTGTAATGGATAATTTGTCAGTTTGATGACCGACCTTATATTATATAGTGAGCAATTGGTTAATTTCTGTCACCAATAAAAAACGGTAAACCATTTGTGAGACGAATTACAACGTATTTTTGTTTTGTATACGAAACAAAAATACTATATTTGTATTTTATATATAGAACAATACCAGATATGGACAAGGAACAAATAAAGCAGATAATTGGTGAGAATCAAGAATTTGTGAAGGATATAACATTTATGGAACGTCCTTTTACTTTTGAGGATGCGGGTAATTATGTGTTTTTAGGTATTCGCCGGGCTGGAAAATCCTATTTGATGTATCAGCGGATACACCAACTGCTGAAAAAAGGGCATACGATAGAAGAAATACTATATATCAACTTTGAAGATGAACGTTTTATCGGCTTGAAATCAGCAGAGTTGGATGATATAAAATTAGCTTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 13608-15404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000121.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_121_length_15502_cov_7.0907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13608 37 100.0 34 ..................................... ATTTCATCTTTTTGTAGAAGAATACTTTTCATAA 13679 37 100.0 37 ..................................... CAAGCAAGTGCTTTAGCAAGCTCGATATTAGAGACGA 13753 37 100.0 35 ..................................... TCGCTTGTTTTAAATTTCTAGGTTTTTTCATAACT 13825 37 100.0 37 ..................................... GCTACCGTCAATAACATTGACGATAACAAGTGAACTG 13899 37 100.0 36 ..................................... TCAAAAGAATAATCATTATTAGAAAACGTCCCTTTG 13972 37 100.0 36 ..................................... ACTACCAATAATAACAGTTGAATTATCGTTCTCAAC 14045 37 100.0 37 ..................................... TCACGAACAAACTGTGGAATAGCCTTGTTGAGAACAA 14119 37 100.0 37 ..................................... TCGTTAATCATAGTACAACCATCTGGTGTAACACTAT 14193 37 100.0 36 ..................................... TGAGTTATTGAACAAATAAAATACATTAAAAAAAAG 14266 37 100.0 36 ..................................... TTTTTGTCCCTGTCTGTAATGCAATCTGAAAAAACT 14339 37 100.0 35 ..................................... GTACAACCTGTGTACTCTAATAATAGGTAAGCTTT 14411 37 100.0 36 ..................................... TGTTAAATAATTTGCTGAGAGTCCATTATCGCTCCC 14484 37 100.0 36 ..................................... TCATTGTGACTAAAATTTTATAAGTTTAGTTGGATA 14557 37 100.0 37 ..................................... CTCAACAAATAAATAGGGATTATCGTAATTTACGATA 14631 37 100.0 38 ..................................... TTCTTGAGTTGTCATATCTTCTAATTTTTTAAGTGGTT 14706 37 100.0 37 ..................................... TGCCAGTTTATCAGCTACATAACCAACAATTTGTCCA 14780 37 100.0 37 ..................................... TTCGGGATTAAATAACATTGTCATGAATGCGCCGAAA 14854 37 100.0 34 ..................................... ATAGCTTTCATATTTTTTATGTTTTAATGGTTAA 14925 37 100.0 40 ..................................... CCATGCTACCAAATTGCCTACCTTATACTCACATAGTAAA 15002 37 100.0 35 ..................................... GCCTATAGTTTATATAAAGACTTGTCGCAATACTA 15074 37 100.0 35 ..................................... CCTTAACTTCCTCAATAGTAGTTGTGCTCAGGAAA 15146 37 100.0 35 ..................................... GCGTGTTGCCATCAGCTGTCATTATTTCAGAAACT 15218 37 100.0 39 ..................................... TTAATAAAATTTTCTCTTTGTCTTTCGGTTTCGCAATGT 15294 37 100.0 37 ..................................... TTGTAACGATTTTCTTGTATCGAAAGGAATAATATTT 15368 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 99.8 36 CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Left flank : GTTTGGACGAACGTATCAAACGGGTGATAGGCTTACTAAATGTTCCTAAAAAAAAATCATTGAATATGTTATTTTTTGTCATGTACGATATAGAAAGTAATAAAGTACGTAATCAAGTTGCTAAGTACTTGTTGAGGAAAGGATGTTTTCGTGTTCAACGTTCTATTTTCTTGGCAGATTTGAATAATCAGGACTATGAGCAGATTCGTTCAGATTTATTAGAAGTGCAGGCTTGTTATGATAATCATGATAGCATTATGATCGTACCGATCTCTACAGACTTTCTTCGTTCTATGAAGATTATTGGGAAGTCAATAGATATTGATATTATAATGAATTCTAAGAATACACTGTTTTTTTAGAATATTTATGTTTTCGTTCTTTGAAATATTGTTTATCTTTGCAGGCTTTTAAAAAGAGAGCTTTTTTCTTTTTTTAGGGTGGTTCTTTTATGTTTTCTGTTGTTTTCTGTTGAAAATGACGTGATTATAATGATAAGG # Right flank : AAGCGTCTCGGCGATGCCGCCCCCCCCCCTCAAAAAAAATAGAAGTAGCATCTCCTCTTTATGTTTCGATCCTACTTCTATTTTCTTTCCATTTGTCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAGAGTAACTTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 2507-1233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000042.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_42_length_38035_cov_13.977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2506 47 100.0 29 ............................................... TTAAGCAAGAGTTGAGGATCAGGAGCAGA 2430 47 100.0 30 ............................................... AAACGTGCGGTATGTCCCGCCGGGTTGTTA 2353 47 100.0 30 ............................................... GTAATCAAACAGGGAACGAGCAGTTATCAA 2276 47 100.0 30 ............................................... AGTTACGACATAGATAATTTGTACCCGCAA 2199 47 100.0 30 ............................................... GTCTGTCGCATTGCTTCGCCCAGCCCTAGG 2122 47 100.0 29 ............................................... CTTTAAACGTTCCGTCTATATCTCCCGTA 2046 47 100.0 29 ............................................... CAAAACCAAGCATTTTACATATCCTTTGG 1970 47 100.0 29 ............................................... TCTTTGAAAAAGGAAATAAACAAGGTAAC 1894 47 100.0 30 ............................................... ACAACTCTCCTGTATTCATGTTTAGTAAGT 1817 47 100.0 30 ............................................... GACACCGCACCTATTATCTATACAGCAAAA 1740 47 100.0 30 ............................................... TAGATTAAAATCTATAGAAGTCTACGAGGG 1663 47 100.0 30 ............................................... GAACGCTGGAGAATTTGTGCGTAGGTCTTA 1586 47 100.0 30 ............................................... AAAAAAGCTTTAATGTCGAATATTGAAGAG 1509 47 100.0 30 ............................................... ATTGCAAGGATACGTCGTCTGACTCCTACC 1432 47 100.0 30 ............................................... TAAAACAGGGAGTAAGAGATAAGTCATAAT 1355 47 100.0 29 ............................................... TGCTGGAAGTTGTAAGCCACCAGTACGGG 1279 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GACAAGCGGCTTCCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACTTAAGCTCTGAAGAACACACGCATGAAACGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACTATGGCTTCCCCTTTGGATATGTCATATATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACTAAACGCATTGTATGACAGACCAACAGCAGGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACAGGTCTGTCATCGTGACAAGCGGCTTCCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACTTAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATCGTGACAAGCGGCTTCCAA # Right flank : ATATCTACAATAAAACAATGTATTTCAATGATTTACAAAGAAAATTAGAAAAGAAAAAAGAAAGCTGTTTCCATAATAAAATCTCGCATTAATGCGAGATTTTGTTTTCCAAATAGGTTGATACTATTTTTTCGATTTCGTTAATGACCAAATAGACAAACCTTTTCAAGGCATCATCATTTGGGAAAGCTTGTTTTTAGTGTACTTTCTAATTTTCCCATTCAGATTTTCAATGAGATAGTGGTATAGATAATCTTTTTAATCTCGACGGGGAAATCAAAGAACACGGTCAGTTCTTCCCAATTATTTCTCCACGAGCGTATCGCATATGGATATTTCCCACCCATTTTTGCTCAAGGTTATCTAACTCCATCTCAGCTGTTTCTTTCGTAAGTGCATTATAGATGTTCTTTAAATCGGCAGTGAACTCCTCTTTTTTTCCCAGACGACATTGCGACAGGAGTTTCTAATTTGTTGTACCACACATATTTGAGTAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 5444-2637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000042.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_42_length_38035_cov_13.977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 5443 47 100.0 29 ............................................... TATCAGAAATTCCTTGAACTTAACATGCG 5367 47 97.9 30 ......................A........................ GGAACGGCACTATGGATAGTACAAGACGCA 5290 47 100.0 30 ............................................... CAGCAACATTGAACGCGGTGGCAGAGTACG 5213 47 100.0 29 ............................................... GCTGCGACACAGACCAGCTGCCTTCTGAT 5137 47 100.0 30 ............................................... TAGACCTAAATTTTGGCACGTCGGAAGCCG 5060 47 100.0 30 ............................................... ATCTCGTTTTGCAACTTAAGCACCCTAGCC 4983 47 100.0 29 ............................................... GTTAGTAAGAATGAGTGAAGAGCTAAGAA 4907 47 100.0 30 ............................................... AGGAGAACACCGTTCAACAGTAGAAGATTG 4830 47 100.0 30 ............................................... TAAACAATGAAGGTAAAATTATCAAAAGAG 4753 47 100.0 30 ............................................... TCCGACTTGAAAAGTGCATTGCGTGGAACT 4676 47 100.0 29 ............................................... TTTGGGATGTGTTGGTTTTTTCTTCACCG 4600 47 100.0 30 ............................................... AAGAGAGCCTTTGGCAGGTACGAGCTCACA 4523 47 100.0 29 ............................................... TTTTAAAATTATGGAAGAAAGACAACAAC 4447 47 100.0 30 ............................................... CCGGAAGCTTAGGGAATCCATGAGCAAAAA 4370 47 100.0 29 ............................................... TGAAAACAATGAACCTCTTTTCTGTTTAT 4294 47 100.0 30 ............................................... CTTGGTTTTCAAGCCTTCCAAAATAGCAGG 4217 47 100.0 30 ............................................... TCCAAATAGTGGTCCTACTGTAGGATGCGT 4140 47 100.0 30 ............................................... TGCTGGCTTATGGATGTCATCTAGTGTTTT 4063 47 100.0 29 ............................................... TTGTTAACTCGGAGGATAAAGAGTGGTTT 3987 47 100.0 30 ............................................... TTTGATGGTTTACGAGCATTTAGAATTCAT 3910 47 100.0 30 ............................................... CCTTGCCCACCTCTTGCGTATAATAACGCT 3833 47 100.0 29 ............................................... TAGTCTGTGCAAAGTTACGAATTTCATTC 3757 47 100.0 30 ............................................... TAATTTCCGCCTGTGAATACAGTCTCTAGC 3680 47 100.0 30 ............................................... TCAAATTACATAGAGAGATGTGAAACACCT 3603 47 100.0 29 ............................................... CAGGAACACCTAAGGAGATTAAAAACTTT 3527 47 100.0 29 ............................................... AGCTATTATTAGCTACTATACGGAGGGAA 3451 47 100.0 30 ............................................... TACCGTTAAGATATCCATATATTTTAGTGC 3374 47 100.0 30 ............................................... AGGTGGAAAAGATAAATGGCTGCTGAAATA 3297 47 100.0 29 ............................................... CAAAGCTCTGAAGAACACACGCATGAAAC 3221 47 100.0 30 ............................................... TATGGCTTCCCCTTTGGATATGTCATATAT 3144 47 100.0 30 ............................................... TAAACGCATTGTATGACAGACCAACAGCAG 3067 47 100.0 30 ............................................... AGGTCTGTCATCGTGACAAGCGGCTTCCAA 2990 47 100.0 29 ............................................... TTAAGCTCTGAAGAACACACGCATGAAAC 2914 47 100.0 30 ............................................... TATGGCTTCCCCTTTGGATATGTCATATAT 2837 47 100.0 30 ............................................... TAAACGCATTGTATGACAGACCAACAGCAG 2760 47 100.0 30 ............................................... AGGTCTGTCATCGTGACAAGCGGCTTCCAA 2683 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 37 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : AAGCTATGTTGTCAAAGATGGACGAACTGGGATTCGGTAACTGTACAAACACTCGTGCTTGTGAAGCTGAATGTCCGAAGAATATTTCTATCAGCAACATCGCTCGCTTGAACCGCGACTTCATCATCGCAAAATTAAAAGACTAGAAACTGCTAGATTTCAATAGCGAGAGCTTAATTTGATTAATGACAGAATCCCCTGCCGGCAAGCCTGGTGGGGGATTTTTTAGAGATATTCAGTAAATGGTTCCTCTTTCTTATAAATTAAGAAGAGTTTTACTTTACGTGAGCTTTTCTCTTAATTTTTTGGTAGGTCCCAGTTTTCCTGTTTTCCGCAATGGGACACCCAAGTCAGATTTGAGTGGTTTTTACCAGCATTTCCTGTTCCGGTGTCATGCCTAAATGATATGCCTCTCCTTGATTCTGGAAGCCGGGAGGATAGCAATACATCATCTTAGTGATTTCTCTCGCCTATTCCAATGAAATATGACTCAATTTTAA # Right flank : TTAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCATCGTGACAAGCGGCTTCCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACTTAAGCAAGAGTTGAGGATCAGGAGCAGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACAAACGTGCGGTATGTCCCGCCGGGTTGTTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACGTAATCAAACAGGGAACGAGCAGTTATCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACAGTTACGACATAGATAATTTGTACCCGCAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAACGTCTGTCGCATTGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 71541-68810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAF010000015.1 Bacteroides ovatus strain D54t1_190329_F5 NODE_15_length_72342_cov_12.3756, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 71540 47 100.0 30 ............................................... ATGGTATAGGCGTTTCTCCTATTGGTAAGA 71463 47 100.0 30 ............................................... GCCATTGTGTGACACTTGAGCAATATCTTA 71386 47 100.0 30 ............................................... CGTAAATCAGTTTTGTGCGAGAAGAACATA 71309 47 100.0 30 ............................................... AAAGTTAATCAGACGTGGGTACCATACACT 71232 47 100.0 30 ............................................... CAACGGAACCGGAACAATAGCCAGTAAAGC 71155 47 100.0 30 ............................................... CTTGAGCAGCTGTGAGAACATTTTCAGATA 71078 47 100.0 30 ............................................... TTCGCACTCCCATGTCTCCGCCATCTGTGT 71001 47 100.0 30 ............................................... TTGGTGAAGCTGACAAAAGAGTGACGGATG 70924 47 100.0 29 ............................................... TATGTCTGCTGCTTCTCCTAACATGTGTT 70848 47 100.0 29 ............................................... CATATATTTAATTTTAGGTTACTTCCTTG 70772 43 91.5 30 .................----.......................... CAGCGATCAGGAGCAACAGCGACAAAGACC 70699 47 100.0 30 ............................................... GTATGCTGAACATAAGAAGAAGCAGAAGGA 70622 47 100.0 30 ............................................... CGCAGCAGCGGCACGTTCCGCATGCGCCCG 70545 47 100.0 29 ............................................... GCAATTTGCATACGTCAGTGGAGCGGATG 70469 47 100.0 30 ............................................... CTTAATAGTCTTACGCTTGTAAGGTTGCTA 70392 47 100.0 30 ............................................... CCATTCTTTTTCAGTAGTGGTAAATGCACC 70315 47 100.0 31 ............................................... TGTATGCATGTCCTTTCATTATCGTGATATT 70237 47 100.0 30 ............................................... CGTGAAGGAGAAGTTGTCACGGATCTGGAA 70160 47 100.0 29 ............................................... GAAATCGTATTCCAGGAAGTTGTTAGCAA 70084 47 100.0 30 ............................................... ATCAGGCATTGCGTTGAAATTGTTGTTTAT 70007 47 100.0 30 ............................................... GCGTATTTTACAATGGGAGTAGACAAAGAG 69930 47 100.0 30 ............................................... AAGCAGGTGTGACAGGAGAAACAAAAGCGA 69853 47 100.0 29 ............................................... TCTGCCGCATCGATACCGGAGTAATAAGT 69777 47 100.0 29 ............................................... TGATATTTACTCAAAAGAAATAGAACGCA 69701 47 100.0 29 ............................................... GTTCTTCCGACCTGATGGGACTCGTGGAG 69625 47 100.0 30 ............................................... GTGATTACCTGATGTATGGGTATGGGAACC 69548 47 100.0 29 ............................................... CACGCTATATTCAGTTTCAAATGCGTCAT 69472 47 100.0 30 ............................................... CCACATTTGCAGAAGCCATACGAGATTGTC 69395 47 100.0 30 ............................................... TCCTCGTCCTTCCGCGCCTTGACCTCCGCG 69318 47 100.0 30 ............................................... CTCAACTGGTCTACAGTCGGATAAAACGTA 69241 47 100.0 30 ............................................... GATCGGGTCGGTTGAATGATGGGAAAAACA 69164 47 100.0 30 ............................................... ATTCCTTCGCATCTGACGAAATAGCAAACA 69087 47 100.0 30 ............................................... TATCACCAAACCGGATATCACACGTAATTG 69010 47 100.0 30 ............................................... CAGTTCCCAAAAAATTGCTTGTACCTGCCT 68933 47 100.0 30 ............................................... TAGAAGTATTTAGTGAATTTGAAAATGAAT 68856 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 36 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Left flank : TCCGGTAGCTTTCAAGGCGTTGAGCAGTTCCTGTTGTTTTCCTAACAAAGAAAGTGTTACACGGTCGAACCCTTCGCCACATTCCATATCGCTAATCGTCTTTTCGTCGGCAATGGCCGCACCCGTTTCTTTATAACTGGTCTTGAAATCACGGGCACTGGAACCTCCCACTACAGCAATAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGCAATGGCCGCACCCGTTTCTTTATAACTGGTCTTGAAATCACGGGCACTGGAACCTCCCACTACAGCAATAATGACTTCGGAACGCTGGGCAACTGCAATAGCTTGTTCAATATCAGTTGTCACAGTATCACGAATGAAGCAGTCTTTCACATATTCCACTTGCAACGGAGATAGTTTAGTCCTGATTCTATCCAATTCTTCGTAGCTAGCAG # Right flank : TGATCCAGCATAACAAAGTGTGTTTCAGTGAGTTAAGAAGATAATCAGAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTTTCTTAGAATAACTCCAATTGTTGTCCCGGGGTATTGACACAAGACACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTGTCTGTGATACACATGATTCCGACATGTCCATGCTCTGGAAGAAAAGATTTAACTCTTTTTATATGTACTATCGCATTCTCGCTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAGCCATCCTTTTGCAGATTCTTTCTGAAATCCGCATAGGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAGAACAAGCACCCACATAACACGATATTCACTAAAACGATCCATTATCGTTCAGGATAAACAACTCGGCGAAGCTCCCCACTAAAACATTTATAAAGTGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGACCCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //