Array 1 3254-1700 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUL01000100.1 Neisseria meningitidis NM134 gnm134.contig.99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3253 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 3187 36 97.2 30 ............A....................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 3121 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 3055 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 2989 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 2923 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 2857 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 2791 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 2725 36 100.0 30 .................................... TAAAAAGATACTCATTCTGCCTCCGTATTA 2659 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 2593 36 100.0 30 .................................... TAACGATTGAAAATGAGTACGCATTAAGTA 2527 36 100.0 30 .................................... GAACACTTGAGCAATTTAATACGCGAACAA 2461 36 100.0 30 .................................... TGATTCTCGCCTATATGAAACGGAACAGTT 2395 36 100.0 30 .................................... TCTATCTTAATTTCTCTTTGTTCTTCTTTA 2329 36 100.0 30 .................................... CATTGCGCCCATTTTGTCTATCCGAACAAT 2263 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 2197 36 100.0 30 .................................... CGGCATAGGTTACAAATGTCAGACCTGTTG 2131 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGACACGAAAC 2065 36 100.0 30 .................................... TTGCGCATGATGGCAACGATGATTACCATC 1999 36 100.0 30 .................................... GAATTGAGCGGTGGTAGAATCGGATTTTTA 1933 36 100.0 30 .................................... ACCGCCCCGATCAATACGGGGACTGCAATG 1867 36 100.0 30 .................................... TTCCCACAAAATTTCTCGCATATTAAATAA 1801 36 100.0 30 .................................... TTGGTTGGGCGGCGGCCTGCCGCCCTTTGA 1735 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //