Array 1 206387-206746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHUM01000029.1 Clostridium botulinum strain ATCC 17786 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 206387 30 93.3 36 ................AT............ GTGGCAACTCTTCCTCAATATTTGTTTTTGCTTCGA 206453 30 93.3 36 ................AT............ TGTTGATTGATTTAGCGGACGAGTTGGGGGACGATA 206519 30 100.0 36 .............................. AAATCTTACCTATATCTTCTTGTTTAAGTCCTTTAT 206585 30 100.0 36 .............................. GTAATAGTTATTCCTGTAATACTAACTCTTTCCGAT 206651 30 100.0 36 .............................. TCAAACACTTGGAGTTTTTACAGATACTATAATAAT 206717 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.8 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGAGATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAGATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATAGAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATAGTAATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TTCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAAATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : GATTAACATTAACATGATATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 8741-9850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHUM01000059.1 Clostridium botulinum strain ATCC 17786 contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8741 30 90.0 34 T..........C...........G...... AATTAACCACGAAACTAGGACTAACGCCCTGCCG 8805 30 100.0 34 .............................. CTGCAGGAAATACACCTTGTCCTACCCCACTAAA 8869 30 100.0 36 .............................. GAACACATATTGGACATATAATAGTATCCATGTTTT 8935 30 100.0 36 .............................. TAAATTAACATCATTGAAAACAGAAGGAATTAAGGC 9001 30 100.0 34 .............................. CTAAAGCTGGTAGTAATGATGATATTATAGATAC 9065 30 100.0 36 .............................. AAGCCTTTGTTCTGCTCAAACAAATCATCTGGAACA 9131 30 100.0 36 .............................. AATTAATTCAATAAGGTATTTTAGACCTAAATATAT 9197 30 100.0 37 .............................. TATTTTCATCTATAGTTGCTTTTAATTCTTTGACTTC 9264 30 100.0 36 .............................. TTCTCCATTATGGAATGTTCCACCAAGACCTATTCT 9330 30 100.0 36 .............................. TCTCTCAAAATCGCAACAGAGAGAAGGAATAAATAG 9396 30 100.0 36 .............................. TATGGCTAGGAATACAACTATTGATGGCTATTATGT 9462 30 100.0 36 .............................. TATAGAAGGGAGTTGTAAAAAAATGTCATTAAAAAA 9528 30 100.0 36 .............................. AATACTTACATTGGCTAGTATGGTTCAGCCAAGTGA 9594 30 100.0 34 .............................. AAAATCCCCCTAAATAAAACTTTATAATAAAAAA 9658 30 100.0 35 .............................. GAACTTAAGAAAAACACAGATATATACTTTGATTT 9723 30 100.0 36 .............................. TAAATTTAGGTTGTGTTATTTCCTCATTTTTCTTTA 9789 30 100.0 1 .............................. C Deletion [9820] 9820 30 76.7 0 T......A...G...T.C...A.....T.. | G [9846] ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.2 34 ATTTAAATACATCTACTGTTATTATTCAAT # Left flank : CTCCCCATTTTAATGATTGACCACCTCAGTCATGTAAAGTCTATCAAATAAGAAGTTTTTCATGAGTGTACAACTAAAACCTATCTCTATATTTATATAAACAATCTAAATAGATTGAATATAGCAACTAATTTTTCTTAAAATAAAAAAATCCCTAAGAACATTAATTATTAATTTCTTAGAGATTAAATCACTCTTATTATTAATTATCACTCATATAAATATGAGTTAAAATTTATTTTTTACTTATTTAGTATATCATAATAATTAAATTCTTACAATATGATACTTACACTCCTCATAACTTACCATTATTATAATATATCTTTATATATAAAGCTAAAAACTGTTCATACTTCCGATTTGGTAATGTGTTAATAAACTACCAAATAAAAATTAAATATGAATTACTAATATAGCTTGTACTTATTAAATCTTTAAAGCACATAATACTTATTTTAGGACATATTAAAGTTATATAGTTTTAGTATTTGTAAAAA # Right flank : TTTTTCTATAAACAACTTAATTACTAGCTTTACTAAATATTTTACCAAGTAAACTTAAATAATCTTTATTATGTAAATATCATTTAATAAAGATAGAATTATCAACGTATCACATAAAATTTATTTAAAATCACTTGGTAAAATAGTATTGAATTTTGAGTTTTAAGTTATATAAATACGAATATTAGTAGTTCTAAATTATTAAATTCCCTTGAAATCTATCAAATATTTCCTTATTGAATTTATATTCTGAATTTATAATTGTAGAAATCTCATCTTCTGTTAACATTAAGCAATATATTCCTGTAATACATTCATAGCAAATATCTTTACTAATTAGCATATCTTCAAATTGCTCTATACTTCCTTTAAAACTATATTTATAGCAAAAATAACTTAAATCACACATGGAATTTTTAATATCAATTTTCTTTTTAGCATAATTATTTCCCTTAAAACTATCTTTGAATTTATTCCAAATATTTTTACCTTTCATATTT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTACTGTTATTATTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //