Array 1 100645-101209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQT01000004.1 Chelatococcus daeguensis strain M3 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 100645 32 100.0 35 ................................ AGCACGCAGTCGGGTAAAGGCGGCGACGGCCGCGT 100712 32 100.0 33 ................................ TGCCCCTTGTGCTTGCCGAAGCCGATGCGCGGC 100777 32 100.0 35 ................................ CTTGCGCGCGGCGGCGACGGCGGCGTCGTGCTCCG 100844 32 100.0 37 ................................ GGCCCGAGGCGATGCGCGTTGAGCTGGAAGGCCGCAG 100913 32 100.0 35 ................................ GCCAAGACGCGGCTGCCGGCCGGCTCGGCGCTCAC 100980 32 100.0 34 ................................ CTCGCGCTCGCGCCAAAGGTCGTTGACGATCCGC 101046 32 100.0 34 ................................ CCGAGTGCCGGTCATGTCCAAGCGGCCCTTGACG 101112 32 100.0 34 ................................ GCCGACCATCACCCGGGCGGCGCCCGTGTCGGCG 101178 32 93.8 0 .........................CG..... | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 99.3 35 GTCGCTCCCCGTGCGGGGGCGCGGATTGAAAC # Left flank : CATGCGAGGGCGAGGCGGGGGGCGCGGCCGGAAACGCGGGCGGGTTCGGACCCGGCGCAGGAACACCAGATCGCAGCCCTGCCCAACCTGTTTGACGGTGGCGGCACGCGGCGATAGCCCGCAGCGCGATCGGACGGATAGAACCCACGGCGCGAATGGCGGCCGCCCGATCTCAACCCCGGCCGGCGGCTTGCGCGATCATAACATGGCGTGCGTCTGCGTCGGGTGCAGGCGGGGGCAGGGCCGATGACCGGCCGACAGTGCCGCGTTGGCCCGGCCGAGACGCCACCCGCAACCGCAGCACGACCAACTGCGCGTCGGAAGCGCGAACCCCAAGCATGCCGAAAAAACCGGCCCTGTTCGCGCACTCCCTGGCTCCTTGACATCGTTGAAACATCATCGTCACGCAGAAAACGCTTCGCTCTCCTGGGCAGCGGCACGACGCGGTTCGCGCTTCCGGCTCTATTTTGCTTGTTCCTGCAATCGGCTAAGAAGAGGCG # Right flank : CTCGCGGCGGTGCCGGCACTCGCGCCGGTGCTTATTGCCTTGCTATCGCCGCGACCCCGCGCGGGCCTTCACGGGCGGTGGGCTGGCCTTCAATACGTTGATTTTCCTTGATTTCCGCGGAGTGGAAGGAGCTGAGATCCAACGTTCTCTGATTAGACATCCAGAAGAACCACGTGGCTCGCGGGCCCGGCCTACCCTTGCGCAATCGGTGTGAAAAACCCGCTAGCACCAAGATCAACGCTCGGAACCATCGTGCTCGAGTACCCCTCGAATTTCAGGCAGCATTTCCGGTGTGACCTCGGCCGTTCGGGGGGGAAGCACTCGATCACCCTGCGGCCCATTCCGCTCGATATCATCGATGAGCAGTTTCATCTGCTCTATCTCTCGAATCTGAGCTGCGATGATCTCGTCCGCCAGCTGGCGAACCCTCGGATCTTGGATAAGAGCTTTTCGCGCATTGTTCACAGCAATTGAATGGTGCGGGATCATCGCTTGCATGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 279659-278091 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQT01000001.1 Chelatococcus daeguensis strain M3 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 279658 32 100.0 35 ................................ TCGATGTCTTCGAGCGCCGTCGTCAGCTCAGTCGT 279591 32 100.0 35 ................................ TCGATGCCGGCTCGCTGCTCGGCATCACGCCGCGC 279524 32 100.0 34 ................................ CTTTTCGTCCTTGGCGCGCTGTTTCTCGCGGTCG 279458 32 100.0 35 ................................ TACCGCGACCAGGGCGCCGCGCAGACGGCCGCCAT 279391 32 100.0 35 ................................ AAGCGCGCGGTGGAGGTGCACCCGCATGGCGCGCA 279324 32 100.0 38 ................................ GCGGCATGGATCAACTCGTAACGGATGGCGCGGCCATG 279254 32 100.0 34 ................................ CTGAAGGTCCGGCAGCTTCAGCTCTTCGAGCGTG 279188 32 100.0 34 ................................ AATAATAGTATCGTTCACTTGCAAGCTGTTTTGC 279122 32 100.0 35 ................................ CCGGCGGCTACGTCGGTATCACCGTGCGCGATCAG 279055 32 100.0 34 ................................ CGTCAGGACTTGCTTGACCGTCGTCTTGTCGGTC 278989 32 100.0 38 ................................ CTTCAGCGAGGATACGCAGAAGCGCCTTGCCGAGACGG 278919 32 100.0 34 ................................ CGCGCCGCCGCGCAACATGGTCACAAGGCCGCGC 278853 32 100.0 35 ................................ GACATCCTCGCCGAGGATGCCGGCAAGGGCGACCC 278786 32 100.0 34 ................................ ACTGAGGAGGTCATCATTGCGCAGGAGCTATCGA 278720 32 100.0 33 ................................ CTCGCGGGTTATGAAGAAATGGATTCCGCCAGC 278655 32 100.0 35 ................................ CTGCCCTTACGCGCCATGCATCACCTCGAGCTGTC 278588 32 100.0 35 ................................ GGCCGGCGCTACGAAGCCGACCACGCCCTCACCGA 278521 32 100.0 33 ................................ AGCCGAGACCGCGGTGGGGCGATTGGCGAGGAA 278456 32 100.0 34 ................................ AATGACTTAGCTGGTGTACCCCTCCGTCCGCGGA 278390 32 100.0 34 ................................ GTAGCTCCCCGCCCTCGCATGGCGCTCCTTTCCA 278324 32 100.0 35 ................................ GGCCGGCGCTACGAAGCCGACCACGCCCTCACCGA 278257 32 100.0 34 ................................ CCATGCGGCCGGCGTGATCGCGAAGACGGCCGTG 278191 32 100.0 35 ................................ GTGCTCGATACCGAGTATGCGGCCATCGGCCTGCT 278124 32 100.0 0 ................................ | GG [278104] ========== ====== ====== ====== ================================ ====================================== ================== 24 32 100.0 35 GTCGCTCCCTACGCGGGGGCGCGGATTGAAAC # Left flank : CCTATGACGTAAACACCTCCGAAGCGGGCGGGGCAGGGCGGCTCCGGCGCGTGGCACGCGCTTGTCGGGATTTCGGCCAGCGGGTCCAATATTCCGTCTTCGAGATCCAGGTCGACCCGGCGCAGTGGACGTTGCTGAAGGCGCGCCTTGAGAAACTCATCGAGCCCGAACGCGACAGCCTGCGCTTTTACTATCTCGGAGCCCATTGGCGCCGACGTGTCGAGCATGTGGGGGCGAAGCCGACCCCCGACCTCGATGGGCCCCTGATCGTCTAGCCGAGCGGGCTTATTCGCAGCCGCGTGCAGCGGCGCCGCCTGTGCGGTGCGAACCGCAAGCGTGCCGGCAAAACCCGTCCCGTTCGCGCAGGCGTCAATTCTCTGACATCGTTGATCTTCTGTTCCGGCGGAAGAAAGGTTGCGGGTCGATCTGCCCGGACCGGAATGGGATACGCGATCAACGTTCGCTTTCGCGTGCTATCGCAATTGGATAACAATGAGGGA # Right flank : CGGCTGCAGTCGAGGTCGAACACGATCATCGGGCTCGGCGCAGCGGTGTTGCGGCGGGCTCTCGGCGGATGCGGGCCGCCTGTGCCGTGCGAAGCGTTCGGGGCGCTCTCGCGCCCCGATGATATTGCTCCCGCGGTCAATTCGCTCTGTTGTGGCGTCAGACGCCGTCTTCCCCGTCGTCAATCGGCACGAGGAAAAGCACATCAAGGCCCTCCTCCTCGCCGTCGAGGGGTTCGTCCTCGTCGAATGCCTCCGCGTCCTCCTCCATCATGAGGTCGAAGGTCTCGGCTTCCTCCTCGCTTGCCGGGCGCAGGCTGAGCGGCATGATGCCGTCCCACAGAGGCTCGCCATCGCTCGTCATCTGTCTGAGGTCGTTCCTGAAGGCCTCCTGATCGAAGACGGCGCGGGCCTGTTCCTCGTCGGCGTCGATCACGGCGACAGCCTTGCGGCCGATTTCCAGTGTATACATGTGAGGTCCTTCATCTCGGGAAGCGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //