Array 1 34505-31730 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWG02000049.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0127 NODE_49_length_34560_cov_42.832080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34504 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 34443 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 34382 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 34321 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 34260 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 34199 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 34138 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 34077 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 34016 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 33955 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 33894 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 33833 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 33772 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 33711 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 33650 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 33589 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 33528 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 33467 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 33406 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 33345 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 33284 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 33223 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 33162 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 33101 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 33040 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32979 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 32918 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 32857 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 32796 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 32735 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 32674 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32613 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 32552 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 32491 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 32430 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32369 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 32308 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 32247 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 32186 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 32125 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 32064 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 32003 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 31942 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 31881 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 31820 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 31759 29 96.6 0 ............T................ | A [31732] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8478-7839 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWG02000083.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0127 NODE_83_length_13753_cov_38.665859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8477 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 8416 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 8355 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 8294 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 8232 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 8171 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 8110 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 8049 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 7988 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 7927 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 7866 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //