Array 1 22024-21130 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADF01000033.1 Neisseria meningitidis strain Neisseria meningitidis isolate R898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22023 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 21957 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 21891 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 21825 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 21759 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 21693 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 21627 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 21561 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 21495 36 100.0 30 .................................... GCCCACACGCCGCCTAGCACGCCGCCGAGA 21429 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 21363 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 21297 36 100.0 30 .................................... TGAACGAGCCGCGCTTTGTCAAACTCCCCA 21231 36 100.0 30 .................................... CCGCTGTTTCGTTTTTCTCAAATGCATCGA 21165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2409-2239 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADF01000040.1 Neisseria meningitidis strain Neisseria meningitidis isolate R898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2408 30 96.7 38 ..........................C... CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 2340 30 100.0 42 .............................. ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 2268 30 96.7 0 ..............T............... | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 97.8 40 CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Left flank : AGCTTCAAGCTTGGGGCGAACGCAACAACGTAACCGTGATTTCGCAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATTGTGCTGGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCACTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCGCACGAAATCATCGTCGTGCTTGATGCCAATATCGGTCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTAGGGCTGACCGGTTTAATCGTGACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCCTCCGACCGCCCCGTCCCCGTCCGCTATATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGAGCCGAAATGCCGTCCGAAAACAGCAGACCGATG # Right flank : CTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCGACC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //