Array 1 12832-11277 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDF01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 99-0449 NODE_1_length_386847_cov_4.0742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12831 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12770 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12709 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12648 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12587 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12526 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12465 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12404 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12343 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12282 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12221 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12160 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12099 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12038 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11977 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11916 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11855 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11794 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11733 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11672 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11611 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11550 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11489 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11428 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11367 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11306 29 93.1 0 A...........T................ | A [11279] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30847-29538 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDF01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 99-0449 NODE_1_length_386847_cov_4.0742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30846 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30785 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30724 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30663 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30602 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30541 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30480 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30419 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30358 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30297 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30236 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30175 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30114 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30053 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29992 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29931 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29870 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29809 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29748 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29687 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29626 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29565 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //