Array 1 150912-152201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTC010000001.1 Providencia stuartii strain PRV00010 PRV00010_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150912 28 100.0 32 ............................ AAACGCACTTAACGTTACCTTGCCAGATGCTA 150972 28 100.0 32 ............................ ATCATAGCTAAGGCCAGCATCAACAAAGAAAG 151032 28 100.0 32 ............................ TGCCGACAAGATAAACATTTTGTTGTTTTCAT 151092 28 100.0 32 ............................ TTCATAAAAAAATTGAGGATTTTGAATGGGGG 151152 28 100.0 32 ............................ CTCAATTTCATAAGGCCATGCACCGTATTCAC 151212 28 100.0 32 ............................ GATACAACTGTACGGCTAAATCGTCAGAGTCC 151272 28 100.0 32 ............................ TTTGGCAATGTAGAAACCGCGCTCTGGCTTTT 151332 28 100.0 32 ............................ TGCGTCCATTATTGGCGGTGTTGGAATTCCTT 151392 28 100.0 32 ............................ GTAATTGCAACACTCGCCCAAGTAGCTGTTTG 151452 28 100.0 32 ............................ TCACACACCAGAAGAGATTGACGCCTCTGGTG 151512 28 100.0 32 ............................ AGAGCAGGTCGCCTCGATTGATACATAATCAC 151572 28 100.0 32 ............................ TTGTCAATTTCCTGACCTGCAAACAACACTCC 151632 28 96.4 33 ....................T....... AGACTCAAGAAGATGTTGAAGTGGTTAAAGAAG 151693 28 96.4 32 ....................T....... TTAATAATCGAGTTTCTTCATTTGTGATTGCA 151753 28 96.4 32 ....................T....... TTAATAATCGAGTTTCTTCATTTGTGATTGCA 151813 28 100.0 32 ............................ AGATTAATCGCCGGAAAAGTGCTATCTGGTTT 151873 28 100.0 32 ............................ CTTTGGAAACCGTTTACTCAATTCTCTGTAAT 151933 28 100.0 32 ............................ TGACACATTCAACATGTTGTATATGTGCGTAT 151993 28 100.0 32 ............................ CTGATTTTGTGCGCTTGGATGGCGTGCCCTAT 152053 28 100.0 33 ............................ GCCCATCTGAGATAAGATAGTTGTCGCGATTTC 152114 28 100.0 32 ............................ TACAACGGGGACTATCTGGACTTTCATCCCGA 152174 28 92.9 0 ..G......................G.. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAATCGGCGTTAGATAAGATTTCAAACATTGAGGCTAAGCAAGGGTTGCAATTGCAAGAAATTGATAAGTTAGATTTCCTTGCAGATACGCGCAGTATTCAAAATAGTCAGCGTATGAGTAATTTGTTAGATACAAATTGGACAGGGGCAACATCAGACTATTATAAAGAGATGGCAATGTTCCAAGCGTCTCAGGATATCTTTAAAGATTTAAATAGCATGTCACTGTTTGGCGGTCGCTAATTTATTAGCCAGCTTCAATTGGGTTGAGGCTGGCTAATTGGTTTACCCACTTCTTTTTCCCTCTTGTTCATATTTTTCCTATCAAACCATTGTATTTTTCTTCGTATGTTTTACCCTTTATTTACCTTTTTATTTTTGCTCTTTAAAAATTTCTGATAAAACAAGATGTTACTAAGGTAGTAAAAAAAGAAGGTATTTAGCCAATAATTAGCTTAATTTATTGTTGTCTAACGCATTTTATTTGCTAGGCTATC # Right flank : ATCACGAAATCGACGCTATATATTAATGAATAATTAGAATACTTTTATAATGAATAGGTTTTAGTCGGAGATATAGAGGTTAATACATATTAATAAGAGTGATTATTTCAATTATTAGATACTTTATCTCTATCAATATTTGATTTGGCATGTTAAGGCGAGTGTGTTACTTTTATTAATACTTAACGTGATATATTGAAATTAATTTATGTGGTTTTATTGATGTTCAAAATAATACATTTAAGTCGCTTTTTAAATGTTTCTCGTTAACTATTTATTATATATGTTAATTTTACTGATATCTTATCAGCTTAGAAATCGATGATTTTACTGTTAACGTTCACTGCCGTACAGGTAGATTAATACATAAACCATATCAAGGTGATAGCTATTATAGGCTTGTTAGCCTTTAGCGAGATGAACAAATGATGATTTATCAACTGATATCAATTATAGGTATATGGTTATATGTTTAATGACTGTTGTTTTTTATAATTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 225822-226269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTC010000001.1 Providencia stuartii strain PRV00010 PRV00010_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 225822 28 100.0 32 ............................ CAGCAAGCCAGTTTTTGCGCGCAACATCTTCT 225882 28 100.0 32 ............................ GAAATATGTTTGCTCAGTATCGTGAACATAGA 225942 28 100.0 32 ............................ GTGGGTATCTGGCTTGAGTGACGATGACAAAA 226002 28 100.0 32 ............................ CAGCAAGCCAGTTTTTGCGCGCAACATCTTCT 226062 28 100.0 32 ............................ GTTCTTGTGATGCTGTAACGGCATTGTTAGCC 226122 28 100.0 32 ............................ ATTCAAATACGATATCGATTCTGGCTTAGGCT 226182 28 100.0 32 ............................ AGTAATGTTGCTAATTAAACCGCGGTAGACTG 226242 28 78.6 0 ....G..AT..T.......A....A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGAGAACTAACAGTGAGCGACAATGAAATGGTCTATACAGCCACTTAGATTGCTCCAGTATTTACTGAAGTACCAATCTTGGCACTACTGAGTCTGATTGGAATTCTGTGAATGAAGATGAACGAGAGGAGGCTATATCGCATTGTATTGCAGACATTGTTGATCTGTGCGTAGCGCCAAAAGACGATTAAAAGGCAATACTAATGAAATGATTACGTCAGGATGGTAAAGCTGAGCAGCGGGACAGGCACAAGTAGCATGGCTTAGTTAACGTTGATGTAACAAAGCATTACAAATAGTTCAAATTTAAAATATCGCTATTAATTTTAGGTGGGGATACAAGATGTGCTGTTTTCCTCTTTTTTACCCTTTATTTTCTCACTTAGAATATATTGGTTAAAAATCAAAAAGTTAAATAGTGTTGAAATATAAAAGGTATTTCTCATAAATCAGGTGTAATTTATTGTTGAATATGGTTTTTTTCATGATAAGTTATA # Right flank : AATAAGGTTTGATGACACTAACTGGTTATATAATTTACTTATTGGTCTGAACACCCAGTCTTAACACTTGCTGTGTCTACTGAGAGAAAAAAGTATGGCACAGCATAGCTTTATTAAAATGTCTAACGACACTCTTGTACCGGCTAATCCCGCTGCGAGAGATTTCCTGCATTCAAAAATCAAGTGTGGTGATGTGCTTTCGGCTGATTTCAAGAAAGCTCGTAACCCACGATTCCATCGCAAGTACTTTGCACTCCTCAATCTAGGGTATGAATACTGGGAACCTACCGGCGGCACTATTTCGCCCGAAGAAAAAGACCTAGTGCGTGGTTTCGTTAAATTTCTCGCTTACTACACCGATAATGATGACGCTCTTCAATCTGCTGCAGATGTTTATCTCGATGAGATAGCACAGAAACGTGCTCACAATATATCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTGGTAGAGCAACCTGGCCACTATGAAACCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 238910-239177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTC010000001.1 Providencia stuartii strain PRV00010 PRV00010_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 238910 28 96.4 32 ................A........... TTTTAAAACCGAAGAAGCTGAAATGGCTTTTT 238970 28 100.0 32 ............................ AGAAAAACTAGGTTGAATAATGCTATATGCCA 239030 28 96.4 32 ...............A............ CGCATGAGTTTTAGAACTCGGTGTTGATAAAT 239090 28 100.0 32 ............................ GTTATATTTAACCAATGTTGCGGCACAAGATA 239150 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTATATTTTGTGAAGCGTAATACTGTTAATATTCAAAAGCATACTCTTCGTATTCCAGTGATTATATTTTATTTCTGATGATAAATTGCTTCTATTTTTTAATGAAGAGGTTATTCACAAGATGATATGGATTGCTTTTACACATAAACAAAAGTATTTATCTAGTAGAGTTTAAATACAAGAGACAAAAGAATTACGTTAGGTGACTATTCTTTTGATAGCTAACTTAGCGAGCCGACTTATGCAACCGATGAAAATCGAAAAATTGGCAGAAGGGCGTGTGTTATTCAAAATTGAAAATTCTTAACGTATTTCTATCTTTTTTGAGGGGATGATATAAGTTTATATAAGGTTCAGTATTTTTTACTCCTTTATTTTTCTGGCTGAAATGTTTCTATTAAAAATCAACTGGTTATATGTCATTAAAAAATAAAAGGTATTTTCCAAAAAATCAGATGTAATATATTGTTGAACTTAGATTTTTTGCTGATAATTTATA # Right flank : ATGTGACCTACGGTTTAGAAGGCCGTAGGTCACTAGTGTGCGATTATATCAGTGGCTCAAAATCCTCTTATCACTATATGCCTGCAATACTGTAAAAATTATTATCTGTTAGTCTTAATACAACATATAAGTTATTTTTATGATATGGATTGGGATCTGCTTCCCAAAATCACCTTATACACTATGAAATTAAAGGCGTAACGGTAGACGTAGCCTAAGTTAAATTGTATTAATATAGCAAGGTGGCTTATCAAAACAAACGGAAGGTTGGCTTAGCATGGATGATCTCTCTCCGTCAGATTTAAAAACAATCCTTCATTCTAAACGTGCCAATATGTATTACTTGGAGCATTGCCGAGTGATGCAAAAAGAGGGGCGAGTTCTCTATTTTACTGAAGCAAAAAATGAAAATCTTTACTTTAATATTCCGATAGCGAACACAACGGTTTTACTATTAGGAACCGGCACCTCTATTACTCAAGCGGCGATGAGAATGTTAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 248191-248398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTC010000001.1 Providencia stuartii strain PRV00010 PRV00010_c0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 248191 28 96.4 32 ................A........... CCTCAGTTACTGTCAGCAATATCCGAACTTAC 248251 28 100.0 32 ............................ ACCATGATAACCACCCCAGCTCGCATCTGGAT 248311 28 100.0 32 ............................ GACTGAGCGCAGTTCTTCTAGCGTTTCCGCGT 248371 28 82.1 0 .......................GTTGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTCGATTCTGACAGTACCGGAAAATGCCATACCAGTCAGTTATGTACGACAACATGTGAAAGGTAAAAAACGGACTGAACTGGATATACAAAAGAAAGCGCAATTTCTCTCAATAAAATCGGGGCAGCCTGCGGAAGTTTGCTTACATGTGTTGAGGAAAAATCAGGTTAATGAATTTAGTCGATTGCCTTTTATCTGGATGGAGAGTCAACAGAGTAAATCTAAATATGAAGGAGCAATTCATCGCCCGTTTCCGTTATTTATTCGCTGTATTTCTGCGGGAAAAGCACAATTAGGTGGGTTTAACTGTTATGGATTAAGTCAGCAAGTCGGAAGAGATGTTGAGTTAGCGACAGTTCCTCATTTTTAACCTTATTATTTTGCTCTTTAAAAATAAAATTATAAAACAATGAGTTACAATTAACGGTAAAAAAGAAGGTATTTTCTCTAAAATATCACTAACTGTTTGTTGTAACTTATTTTTTATTTGATAAGCTCGC # Right flank : GTGTTTTAAATAAGTGAAATATACCATCATCATAAAAATGGGAACTTATAGTCGCTAGTGTTGTTTGTGAGATATCATCTCATTAATAGTTAAAGCTGAAGATAATATATAAAAAGAATCTATCAATAGAGCGGTAAATAATACTGCACATCAAATACGTAACCTAATAAATAGAATGATATTATTTGATAATAGTCAAATTTACGTTTTAGTTGTTATGATTTAGATAATGTTTAGCGTATTTGTAAATATTCGCTAAATAACATTGCTATTGATATAAATAGTAAAAAATAGCCCCAAGATATATTGGGGCGAAGCTTAAAATCAGCATTACAGGGAAAATCCAGTAATCAATGCATTCTCTCGTAGGGGGAGAATGTGATAAGTATAGTACAGTAGTTTTAATTAATTGCATAACAAGAATATGTTACCAAATACTGAATGGAATGTACTGTTTTGAACTATTTTAGTGAATAAAATACAATGTTATTGATAAGGAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //