Array 1 508421-508609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKOX010000001.1 Ligilactobacillus ruminis isolate MGYG-HGUT-01334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 508421 38 100.0 38 ...................................... ATGACGGTAGCTGAACTAGCTGACCAATACGAAGTCAG 508497 38 100.0 37 ...................................... CATACTCATATTATAACATATTCTAGATTTTAACTCA 508572 38 97.4 0 ....................................T. | ========== ====== ====== ====== ====================================== ====================================== ================== 3 38 99.1 38 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATCAC # Left flank : TCTCCTTTGTAATTATTTTCTAATTCCCATAATGAATGCGGCGTAGCCCCAATCCCATATGAGCTTTGCAAAGCTGTTTTCAAGATATTCGCGTATGTCATCATCATATCCTGTCATGCGTGAGATGATGACAATATGCTCTCTGATGGTTTCATATGTCAACGAACTATTGGCATTGTGACTGTACCACAAGAAAAGACTTTGACGTATAGCCGTGTATTCAATCATAATCCACTGCATTTTGATAATCATGTGTTCAATAATCTTTTTAGTGGATGCTGCTTCAGGCGATATCAGGTCGGAAAACAGCTCGTTTGCCAGATAATTGCGAAAAACAATGTCATAATCTGTGAGCATTGAGCAAAATTGCTTCTGCGATGTTTGCAAGGTGCGGCTTATGGAATTATTGTCTGACTGTGAATAAATATTCGAGTATTTACAAGCCTCGGTCAGTACAGGCTGAAGAAAGGCTGTGTATAAACTCTCTTTACGATAATTTA # Right flank : CAATGCGTCCGGCGGTAAACCAATGGATTGTTTTAATGCTTCTATGTTGCAGGGAAGTGTAAACCACGCACAGCCTGTATCTTTTTCCTGTTCATCAAGATTGATAACAAATACTTTCATTTCTGCCATAAGCAATACCACCTGTCAAAGTTTGAACATACCGTTGTTGCAGAGAGCATAACGTCCTTTTTCTTCCAGTTCATGGGCGTAGGCTTCCAGATTAAAATATTTCTTTCCTTTTTCGGAAAGAGCAGAAAATTCAATGTTATGCTCTAAGCGGTAACGAGCAACGTCCATGATGTTGTGACACTCTGGATAAAACAGAAATTCTTCGGATTTCTGCAATAAATCCTCTACACCGCCACAATAGGGAATCAACTCTTTATAAGCCTGCTGAACCTCTGGCGATAAATCCGTGTAAGCAAAGTACAGCTTATTTAAGCGTCTGACAGAAGTTGTCCTTACAATGTCACCAGCAAAGGGAAGCTTCATATCTGTGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 509967-510230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKOX010000001.1 Ligilactobacillus ruminis isolate MGYG-HGUT-01334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 509967 36 100.0 42 .................................... TAACCTGTGTAAGTTTCAGCATCTTAATCCGTTCCTGAACGA 510045 36 100.0 42 .................................... ATAAACAATAAAATGTTGTGCAATAATTTTGCATTTGATGAT 510123 36 100.0 36 .................................... AAGAAGTAGTAGACCTTGAAAAATTGGTCAATGAAA 510195 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 100.0 40 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Left flank : CAACATTTAAAGGCGTTCCAATGATTAGTCCCGTTACCAATATCAGAACTAACTGTAATACCATCGGTATCAAAACAATATTCACGTTTTCCCGAAGTCAGTTTATTATCCATTTTAGAATGAACAATAGTTATTACTTTTTTCTGAAATGTGTTAGCTCCGTTTATGATAATCCAGATAAAGAAAACTGAAAATAATAATCCAATAATACCATAGCCAATACGACTATTCATAAAGCAGAGAATCGTATATATTAACATTATGACAGCCATCACAGACGATAACCCTGTTGCAAATTTACGTTTCTTTACATTTTTATCACTGGCTAAAACGATTTCTTTTAAAATATCTTGTTCTTGCTGTCCGATTTCAATACTGTATCTAACCATAATAAGAATCTCCTTTAAACATTTTAATGATATTAGTATATTACCACAAGTTTGTGTTCAAAATGTGGGATTCTTCATGTTACGCTCCAATAATCTTATTGAATAACTGTA # Right flank : CCCCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTGAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGCACCAATACATCGAACATCTATATTTTATTCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTTCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTGAGACATGAAGACCTGATGTTTTAAAAATACAGTTCTGCGAATCTCCTGCTCAATTAGGGCGCCAAGGCGGGATTACGAGCAAATTGCCGGTTTCTTAAGATTTGATCGTAAATTCCAGTCTTCGACGAAGAATTATCCCGGATACACAAAGTCCCGGATGAATTTTGCAGTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 564207-562517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKOX010000001.1 Ligilactobacillus ruminis isolate MGYG-HGUT-01334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 564206 36 100.0 30 .................................... ATAGTTGTTCAAAGGGAACAAGGAAGGAGT 564140 36 100.0 30 .................................... AATCATACCATGCGAACCCCAAGCGTTCTC 564074 36 100.0 30 .................................... CCATATCTGATCAGTTGACCGTCCTCGTTA 564008 36 100.0 30 .................................... TGCCGATAATAAATCCGAAAGTATATATTT 563942 36 100.0 30 .................................... TTACACGTTGCGTAAGTGCGTTGATAAGGT 563876 36 100.0 30 .................................... ATGGCGGGCGCTATGATTTTCACTTTTTGC 563810 36 100.0 30 .................................... AAGATGGCAGAACGTCTTAAGATTGCGAGG 563744 36 100.0 30 .................................... GTTCAATCGTGTTCCATAAAAACTGTCTGT 563678 36 100.0 31 .................................... TTCAAGCGTACTTCACCCACCGACAAAGCTT 563611 36 100.0 30 .................................... TCGTAACTGGCTTTTTGAAATCGCTGGTCA 563545 36 100.0 30 .................................... CAATGTCTTTCATTTCATTTGTCCTCGCTT 563479 36 100.0 30 .................................... CTGTGAACTTCTAATCTGACGCAATAACTT 563413 36 100.0 30 .................................... GTTCAAACATTGAGAAAATAAGTGCATATG 563347 36 100.0 30 .................................... AATGCGGTTGCATTAACTACTTCTATGTAC 563281 36 100.0 30 .................................... GCATAATTCTATCACCTCTAAATTGTCATT 563215 36 100.0 30 .................................... AAAACAACCGTAGTAGCAAGCGGAAGCGGC 563149 36 100.0 30 .................................... TGCACAAACCAATTATCGACATGGAAACGT 563083 36 100.0 30 .................................... TGTGGCCATGCAATATAAGATGTTGTCTAT 563017 36 100.0 30 .................................... ATATTTTATCTGTTATTTCATTAGTTTCAT 562951 36 100.0 30 .................................... CTGCCCTCATAAACAATGCAGCCGATAGAC 562885 36 100.0 30 .................................... ATTGACGAAGAAGGACTGGACAGCTTGATT 562819 36 100.0 30 .................................... AAGGCTTCATCGGTAGCGACGGGTGGAATT 562753 36 100.0 30 .................................... TTGTCGGCAAGACGCTTTCATCCCTCTTCA 562687 36 100.0 30 .................................... ATCTTGCTCCGGCAAGATACATCGAAATGC 562621 36 100.0 33 .................................... CTTAGGTGAATCTGGATTACTCCCGTATACACG 562552 36 77.8 0 .......T.......T....AG.......C.CA..A | ========== ====== ====== ====== ==================================== ================================= ================== 26 36 99.1 30 GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Left flank : TGGAAATAGATGTGGGCAAAAAATATCTCAATGAGCTTCTAAAAAAATCTGTTGAATTCATGCCTGACGAATTGAGAAAACAAGTTTACGAATTGGAGAGACAAACTGCAACAGCATTACAGGATTCAATATATATGTTTGATCTGCCGCTTATCGTATCAATGGATAATGATCTCAAAAAAACATTAAAGAATTATCATTTTTCTGTAGATTCCAGTATAGCATATGATCCGTGTGCTATAATTGAAACTGACATAAAGATTCATGCTGAATGCGCATTAAAAAAAGCTATCGGCGTTAGCGGGTTAGCTACCTATCTAACACCCGAAGAATTCAGTTATATCAAAGATGTAGTGAAGGAAATGGATGTCCCTTTACTGATGATTGATTACAATGTTTCCGGTTGGAAAAGCTATTTTGATAATTGCAACGTGATGTATATTGACGAGGACTTCATTGACTGGCATTAACTAAAATTAACTGTTGATTAAAAAGAGACG # Right flank : TGTGTAAATTAAGAAAGAGCGACCAGTTATCAAATGATAATCGGTCGCTCTTTCTTATGTTCTACCATTATCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATGGCCTGTTTCAACGCATCCGTTTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACGCAGCCCAGTGCGAACCTGTTCGTTGTCGTCTCTGTATCTTTCATGCGAAAAAGATATTTGGAATATGATTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCGATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCTCGTTTGCGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTATAGATGTGGATCAGTTCTCCGAGCGAAATGTGTTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCTGGATGTCATATCAATGATGTTATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //