Array 1 468481-469912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALIP010000008.1 Salmonella enterica subsp. enterica serovar Newport strain KUFSE-CM187 Sal187_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 468481 29 96.6 32 ..........T.................. CTTTCCGAATTAATGACGGAGTTATCGATATA 468542 29 96.6 32 ..........T.................. AGTCGGCTTGGACGTTGACGGCACACCCTTCC 468603 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 468664 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 468725 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 468786 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 468847 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 468908 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 468969 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 469030 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 469091 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 469152 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 469213 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 469274 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 469335 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 469396 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 469457 29 96.6 32 ............................A CTCGGATGGTTACGCCAGATGTATGCAATTTC 469518 29 100.0 32 ............................. TGTTCTCCTATCTGCGGCAAATTAAGCTGAAT 469579 29 100.0 33 ............................. AAAACTTGATACTCGATTATCGCTATCCCCTGC 469641 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 469702 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 469763 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 469824 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 469885 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479050-479567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALIP010000008.1 Salmonella enterica subsp. enterica serovar Newport strain KUFSE-CM187 Sal187_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479050 29 100.0 32 ............................. AGAAGAATTCTTTTGCCTGCGCGTCGTTCATA 479111 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 479172 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 479233 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 479294 29 96.6 32 ..................A.......... CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 479355 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 479416 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 479477 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGT 479538 29 100.0 0 ............................. | A [479565] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAACGCATTAAGTAATTTTTCCCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCCAGCAATTTAACCATATAACCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCTAGCAATCGGAGTGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGAGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGTGAATCTGCAAACCAGGTATGGCACTCAGTAGTCGCGTTGCCATCATCACGGGCATAATCTTCAGCTATATTTTCTGTTGGCTGCCAGATGGATTGTCGGAAAGAGTCCGACATTTCTCGCCCACCGTGTGCCAGGATGAGCGATG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATAGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //