Array 1 40513-39509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEWN010000031.1 Escherichia coli strain NJJYYY51-CR NJJYYY51_Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40512 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40451 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40390 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40329 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40268 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40207 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40146 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40085 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40024 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39963 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39902 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39841 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39780 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39719 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39659 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39598 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39537 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57690-56014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEWN010000031.1 Escherichia coli strain NJJYYY51-CR NJJYYY51_Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57689 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 57628 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57567 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57506 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57445 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 57384 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 57323 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 57262 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 57201 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 57140 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 57079 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 57018 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56957 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56896 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56835 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56774 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56713 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56652 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56591 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56530 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56469 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56408 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56347 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56286 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56225 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56164 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56103 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56042 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //