Array 1 224465-223295 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLQ01000061.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA40 strain SGSC 2220 SEEHRA40_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 224464 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 224403 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 224342 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 224281 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 224220 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 224159 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 224098 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 224037 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 223976 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 223873 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 223812 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 223751 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 223690 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 223629 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 223568 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 223507 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 223446 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 223385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 223324 29 96.6 0 A............................ | A [223297] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 241666-240723 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLQ01000061.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA40 strain SGSC 2220 SEEHRA40_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241665 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 241604 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 241543 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 241482 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 241421 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 241360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 241299 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 241238 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 241177 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 241116 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 241055 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 240994 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 240933 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 240872 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 240811 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 240750 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //