Array 1 120145-118872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLNF010000007.1 Roseibium limicola strain CAU 1637 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 120144 31 100.0 35 ............................... GAAAAGGTCGCGCAGCGTGCCTATCTCTTGAGCGG 120078 31 100.0 34 ............................... TGGCGCGCAGGGCCTGGGGTGGTCGCGCAGACGC 120013 31 100.0 35 ............................... CGCCTGTCTCTGCGGTGATTGGCGACGAAATAAAA 119947 31 100.0 34 ............................... TTACATCGGCAACGGGTCATCAACGGGTCCGATC 119882 31 100.0 35 ............................... CTGAACGAAAAGGGCATCGACCTGGAGCAAACCCT 119816 31 100.0 34 ............................... TGGCCTATCTGCCGGGTTCAAGATCTCATCCGGC 119751 31 100.0 34 ............................... CCGCCAACGAAGGGAGACATGCCCCCCACGTATC 119686 31 100.0 33 ............................... GCGTCCACGACAACGCCCTGGTTGTAGGCCGGG 119622 31 96.8 33 ..........T.................... AATCAAGTTGCTCCGCCGACCCCGAGCCTTAAG 119558 31 100.0 34 ............................... AGCAGTGCACCCGGTCGGGTTAAGGTGGGCTGTC 119493 31 100.0 34 ............................... CCGCAGCGCTTCAGGCATTTCTCCGCAGTGGCGC 119428 31 100.0 33 ............................... CCTTTACTGGTGATCTGTCGAAGCATGTCGAGG 119364 31 100.0 33 ............................... CTCGCGACCTGTATGCAGGGCATCGGCGGCGGG 119300 31 100.0 34 ............................... CGGTCATCTGGTCTGGTCCTTTTGTTGCGCCTTA 119235 31 100.0 35 ............................... CGTCATTGTGCCAATTCGGCCATGGTGTGCAAGGG 119169 31 100.0 34 ............................... GATCCCGCGCACTGGCAAGCCTGGGCCTTTGGAA 119104 31 100.0 36 ............................... CAGATCGGCCGCCCGCAGGTTCGCGGCGATGTAACA 119037 31 100.0 34 ............................... TGCAGGGTCGCACCATCGGTTACCACGAAGTCAA 118972 31 100.0 40 ............................... ATGGGCTCGGGCAGCACGGGCGTGGCCTGCGTGCGCGATA 118901 30 93.5 0 ........-................G..... | ========== ====== ====== ====== =============================== ======================================== ================== 20 31 99.5 34 GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Left flank : ATAGGAGGCGTCGTAGTGCTCGTTCTAGTAACTTATGATGTTCGAACATCGGAAGCGGACGGGCCAGCCCGTTTGCGTAGAGTGGCCAAGGCTTGCCGGGATTTCGGTCAAAGAGTGCAATATTCGGTTTTCGAAATTGAGGTGGATCCTGCCCAGTGGACCAAGTTGAAGGCGCGGCTTGAGCAAGCGATAGATCCGAAGCATGACAGCTTGCGCTACTATTATCTTGGATCGAACTGGCAGCGGAAAGTCGACCATATCGGTGCAAAGCCTGCGGCCGACCTCGGCGGAACGCTGATCATTTGAAGGGTTTTGGGTACCGCACGCGAACTCCAAGCGCGCTCAGAAATGCGGGGAGGTTCGCACCTTTCCCAGTTCATTGAAAATATTGATATAATTTTTTCGTTAGCGGAAGCGCGCTGCTAAAGGCGCGTGTGAATTTACAGGCTCGCAAAATGGGGCGGGTTTAATAAGGCTTGTCAACAAGTTGCCCTTAACTA # Right flank : CATCCAAAGGCCAGCGACCCCTCTCCACGGAGGCGTGGCTTGAATGCCGCGTTTTGTCGCCGGCTATTTCCCTCCCATTGGAAAAGTAATATGGCCCCCGGCTCAGATGCTGAGGCAATTCCCGCTTTTGTAAGCTAGCTAAAAATTATCAACCTCTTCGCCCCCGTAGATCTCTCCGTCACGTGAATTCCCTTGTGCCTCAGAAGCGGTGACGCCCGGTCCACCACGTTTCCCAGCGCATTCGGTTTTGCTGGCCAGAAGCGGGAGCGGCGGAGCTCTTCGGAGACGATGCGGTTCAGGTGTCCGAGCAGTTCGGTTGCGGTGCCTTCCCAACCGTTAGTCGCCGTGGCGATCCTGAACGAATTTCAGGATCGCCACGGCGACGGGATCGGATTCAAAAACAGCTTCAATTGTTGCTTGGCGGTTGGCAGTATATTCAGACATGAATTCACCTGCTTCCCAGCTAAGCCCAGGTTCTGCCGCTGCAAGCAAATGTGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59417-61170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLNF010000005.1 Roseibium limicola strain CAU 1637 contig5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 59417 36 100.0 31 .................................... CCAGTGGTCTCCTGCTGCGGTTGCTCACTAT 59484 36 100.0 30 .................................... GGTCGTGGTAGTAAATATACCCGTCCGTTC 59550 36 100.0 30 .................................... GTGCAGCGCCTTGCCCCCTCAAACTCCATC 59616 36 100.0 30 .................................... CCATCGGTCCCCACGCACTTCGTCACGGCA 59682 36 100.0 30 .................................... GCCAACGCGCAGCGCCTCTCCTCTTACATC 59748 36 100.0 30 .................................... TCATCACTCAGCCCTCCCCTTATCCAGCCA 59814 36 100.0 30 .................................... TACCTCAACGACTGTACCGGAGGGCATTGA 59880 36 100.0 30 .................................... TAGGCCTATTGAAGAACAGCGTCAGATTTA 59946 36 100.0 30 .................................... AGGGGAGTGGTGGAGCCTAGTGGCTTCTCA 60012 36 100.0 30 .................................... TCAGCCAATATTTCCCCCGCCTGGCGTGGC 60078 36 100.0 30 .................................... CCATAGGATCGAGGACAAGTTGAAAACGTA 60144 36 100.0 30 .................................... ATACGTGATGCTGTCCTTGAGCTTGCCCCA 60210 36 100.0 30 .................................... CACGCCTGCTGACAAGTCAGGCCCGCCGAG 60276 36 100.0 29 .................................... TACGGCGACGAGCCCCAGCATCGAAGCGA 60341 36 100.0 31 .................................... TGCGCGGCGTATGGGTCAAACTCGTTGTAGT 60408 36 100.0 30 .................................... CCAAAGCCGACCGGGCAATGAACGGACTTA 60474 36 100.0 30 .................................... TTCCACTCAAAGACGCCATCGTCCCAAGAG 60540 36 100.0 30 .................................... ACGTCGGCCTTGGGGGAGATCACGATTGCC 60606 36 100.0 30 .................................... TTGGACCCAAAGAACACCTTCATCAACCCC 60672 36 100.0 31 .................................... GTCTGCATGAGCATCCCCCTACACTACCTAG 60739 36 100.0 30 .................................... TGATTGATCCGAGCATTGGCGGCGTGCTTT 60805 36 100.0 30 .................................... GGCACTCGGCACGGCACGAGGGGCGTTGAC 60871 36 100.0 30 .................................... AATGTCATTCGAAAGGGTCTTCAGCCCGTC 60937 36 100.0 30 .................................... GGAAACCGACAATGAACGGTCAAGCGCCCA 61003 36 100.0 30 .................................... CCGCATCTTCGCCGTGATCTTGCGATGCTT 61069 36 100.0 30 .................................... GGCAGCAATCCAGACCCTTTCTCTAAGGTG 61135 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTGCGGTTGGCCTGACTTTTCCAGAGTGCTACAAC # Left flank : GCCCATTGATGATCCCTTCTGGGATCTCTTTGCACCGCCCAATGGCTGGAACTGCCGCTGCACCCTGCAAAGCCTGTCGCAGAGGGATATTGACCGGCTGCTGGCGGCAGGTGAGGCGCTGGTGTTTGAGGCACCGCGAATCTCGTTTCAAGCCTGGACGAACAAGCGGACCGGCGAGACCCGGCAGATCCCGGACGGGATTGATCCAGGGTGGGATTACAATCCGGGCAAGGTGGGGCACACTGAGACCGTGAAGCGGGTTCTGGCGATGGGTGAACCGGAATTCCGGGATGTTTGACAGGAAGGCCGTAGAGCTCGGTTTAAGGCGCTGGATGCATCATGATGGCCAGAAACGGCTGAAGGCGCTCCTGCCTGTTTAAAGGGTGTTTAACGGCGAAGTGGAGAAGGGGCGGAGAGGGGGGGAAGGTGTTTCATCTGGAAATTACGGAGTCGAGCCGGGATCAATTCTGCCAGGCTTGAGGCTTGTTGAACGTATCTAG # Right flank : CCGGCTCATCCGCAAGTGGATGTTTTTCAAAGAAAATCCGGGCGTATTGCCCGGGTTTTCTGCTTCAAAGGCCTTCAAAACATCACCAGCTGGCTCGGATTTTTCTGGGCAGCATTTCGTTTTCGTCCGCGCAGGCAGACGATATTTTCATACTGCTTGTCGGTAAACTGCAAAATGTCGACCTTTCCTTCTGTTGGCATGGCGGCCTCAATTTTGCGAATCAAGGCATCTACAGCTTCTTTGCCGCTAGTGTGGCGGAGATAAACGGAAAATTGCGCCATCTCGAAACCGGTATCGAGCAGGAAGTCTCTGAATTGCGTATAGGCCCTGCGTTCTGCTCGGTTCATGACTGGAAGATCGAATAATACCATGACCCACATAAACTGATATCCGCTGAAGTGAGTAGCTGCCGGCACCATCAACCCGCAGCCTGCATTGTCGGACTGCCTGAAAATACGGGTATTCCGGGAAGATCCAGCGCCTTGTTCTCTCCAAGAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGCCTGACTTTTCCAGAGTGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //